• Survivorship Data in Prostate Cancer: Where Are We and Where Do We Need To Be?

    Authors: Russell B., Beyer K., Lawlor A., Roobol M. J., Venderbos L. D., Remmers S., Briers E., MacLennan S. J., MacLennan S., Omar M. I., Van Hemelrijck M., Smith E., N'Dow J., Plass K., Ribal M., Mottet N., Shepherd R., Abbott T., Mastris K. & Lancet D. (2024),
  • Competitive fungal commensalism mitigates candidiasis pathology

    Authors: Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024), Journal of Experimental Medicine. 221, 5, e20231686
  • Genome-wide association studies and polygenic risk score phenome-wide association studies across complex phenotypes in the human phenotype project

    Authors: Levine Z., Kalka I., Kolobkov D., Rossman H., Godneva A., Shilo S., Keshet A., Weissglas-Volkov D., Shor T., Diament A., Talmor-Barkan Y., Aviv Y., Sharon T., Weinberger A. & Segal E. (2024), Med. 5, 1, p. 90-101.e4
  • Expanding and Enriching the LncRNA Gene–Disease Landscape Using the GeneCaRNA Database

    Authors: Aggarwal S., Rosenblum C., Gould M., Ziman S., Barshir R., Zelig O., Guan-Golan Y., Iny-Stein T., Safran M., Pietrokovski S. & Lancet D. (2024), Biomedicines. 12, 6, 1305
  • Loss-of-function cancer-linked mutations in the EIF4G2 non-canonical translation initiation factor

    Authors: Meril S., Bahlsen M., Eisenstein M., Savidor A., Levin Y., Bialik S., Pietrokovski S. & Kimchi A. (2024), Life Science Alliance. 7, 3, e202302338
  • The GARD Prebiotic Reproduction Model Described in Order and Complexity

    Authors: Mayer C., Lancet D. & Markovitch O. (2024), Life. 14, 3, 288
  • Endocrinology in the multi-omics era

    Authors: Shilo S. & Segal E. (2024), Nature Reviews Endocrinology. 20, p. 73-74
  • Quantification of beta cell carrying capacity in prediabetes

    Authors: Woller A., Tamir Y., Bar A., Mayo A., Rein M., Godneva A., Cohen N. M., Segal E., Toledano Y., Shilo S., Gonze D. & Alon U. (2024), BioRxiv.
  • Continuous glucose monitoring and intrapersonal variability in fasting glucose

    Authors: Shilo S., Keshet A., Rossman H., Godneva A., Talmor-Barkan Y., Aviv Y. & Segal E. (2024), Nature Medicine. 30, 5, p. 1424-1431
  • Melanoma and microbiota: Current understanding and future directions

    Authors: Routy B., Jackson T., Mählmann L., Baumgartner C. K., Blaser M., Byrd A., Corvaia N., Couts K., Davar D., Derosa L., Hang H. C., Hospers G., Isaksen M., Kroemer G., Malard F., McCoy K. D., Meisel M., Pal S., Ronai Z., Segal E., Sepich-Poore G. D., Shaikh F., Sweis R. F., Trinchieri G., van den Brink M., Weersma R. K., Whiteson K., Zhao L., McQuade J., Zarour H. & Zitvogel L. (2024), Cancer Cell. 42, 1, p. 16-34
  • CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

    Authors: Jain S., Bakolitsa C., Brenner S. E., Radivojac P., Moult J., Repo S., Hoskins R. A., Andreoletti G., Barsky D., Chellapan A., Chu H., Dabbiru N., Kollipara N. K., Ly M., Neumann A. J., Pal L. R., Odell E., Fishilevich S., Lancet D. & Yosef N. (2024), Genome Biology. 25, 1, 53
  • Bacterial SNPs in the human gut microbiome associate with host BMI

    Authors: Zahavi L., Lavon A., Reicher L., Shoer S., Godneva A., Leviatan S., Rein M., Weissbrod O., Weinberger A. & Segal E. (2023), Nature Medicine. 29, 11, p. 2785-2792
  • A pathogenic variant in the uncharacterized RNF212B gene results in severe aneuploidy male infertility and repeated IVF failure

    Authors: Gershoni M., Braun T., Hauser R., Barda S., Lehavi O., Malcov M., Frumkin T., Kalma Y., Pietrokovski S., Arama E. & Kleiman S. E. (2023), HGG advances. 4, 3, 100189
  • A randomized clinical trial comparing low-fat with precision nutrition–based diets for weight loss: impact on glycemic variability and HbA1c

    Authors: Kharmats A. Y., Popp C., Hu L., Berube L., Curran M., Wang C., Pompeii M. L., Li H., Bergman M., St-Jules D. E., Segal E., Schoenthaler A., Williams N., Schmidt A. M., Barua S. & Sevick M. A. (2023), American Journal of Clinical Nutrition. 118, 2, p. 443-451
  • Structural and biochemical analysis of a novel atypically split intein reveals a conserved histidine specific to cysteine-less inteins

    Authors: Pasch T., Schröder A., Kattelmann S., Eisenstein M., Pietrokovski S., Kümmel D. & Mootz H. D. (2023), Chemical Science. 14, 19, p. 5204-5213
  • Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

    Authors: Kennedy K. M., de Goffau M. C., Perez-Muñoz M. E., Arrieta M., Bäckhed F., Bork P., Braun T., Bushman F. D., Dore J., de Vos W. M., Earl A. M., Eisen J. A., Elovitz M. A., Ganal-Vonarburg S. C., Gänzle M. G., Garrett W. S., Hall L. J., Hornef M. W., Huttenhower C., Konnikova L., Lebeer S., Macpherson A. J., Massey R. C., McHardy A. C., Koren O., Lawley T. D., Ley R. E., O'Mahony L., O'Toole P. W., Pamer E. G., Parkhill J., Raes J., Rattei T., Salonen A., Segal E., Segata N., Shanahan F., Sloboda D. M., Smith G. C. S., Sokol H., Spector T. D., Surette M. G., Tannock G. W., Walker A. W., Yassour M. & Walter J. (2023), Nature. 613, 7945, p. 639-649
  • Attractor dynamics drives self-reproduction in protobiological catalytic networks

    Authors: Kahana A., Segev L. & Lancet D. (2023), Cell Reports Physical Science. 4, 5, 101384
  • Impact of dietary interventions on pre-diabetic oral and gut microbiome, metabolites and cytokines

    Authors: Shoer S., Shilo S., Godneva A., Ben-Yacov O., Rein M., Wolf B. C., Lotan-Pompan M., Bar N., Weiss E. I., Houri-Haddad Y., Pilpel Y., Weinberger A. & Segal E. (2023), Nature Communications. 14, 5384
  • Unanswered questions in prostate cancer - findings of an international multi-stakeholder consensus by the PIONEER consortium

    Authors: Omar M. I., MacLennan S., Ribal M. J., Roobol M. J., Dimitropoulos K., van den Broeck T., MacLennan S. J., Axelsson S. E., Gandaglia G., Willemse P., Mastris K., Ransohoff J. B., Devecseri Z., Abbott T., De Meulder B., Bjartell A., Asiimwe A., N'Dow J., Smith E., Lancet D. & Bernstein G. (2023), Nature Reviews Urology. 20, 8, p. 494-501
  • Gut microbiome modulates the effects of a personalised postprandial-targeting (PPT) diet on cardiometabolic markers: a diet intervention in pre-diabetes

    Authors: Ben-Yacov O., Godneva A., Rein M., Shilo S., Lotan-Pompan M., Weinberger A. & Segal E. (2023), Gut. 72, 8, p. 1486-1496
  • Collectively autocatalytic sets

    Authors: Ashkenasy G., Kauffman S., Lancet D., Otto S., Ruiz-Mirazo K., Semenov S. & Xavier J. (2023),
  • Wearable and digital devices to monitor and treat metabolic diseases

    Authors: Keshet A., Reicher L., Bar N. & Segal E. (2023), Nature metabolism. 5, 4, p. 563-571
  • Phage-display immunoprecipitation sequencing of the antibody epitope repertoire in inflammatory bowel disease reveals distinct antibody signatures

    Authors: Bourgonje A. R., Andreu-Sánchez S., Vogl T., Hu S., Vich Vila A., Gacesa R., Leviatan S., Kurilshikov A., Klompus S., Kalka I. N., van Dullemen H. M., Weinberger A., Visschedijk M. C., Festen E. A., Faber K. N., Wijmenga C., Dijkstra G., Segal E., Fu J., Zhernakova A. & Weersma R. K. (2023), Immunity. 56, 6, p. 1393-1409.e6
  • Apoptotic cell death in disease—Current understanding of the NCCD 2023

    Authors: Vitale I., Pietrocola F., Guilbaud E., Aaronson S. A., Abrams J. M., Adam D., Agostini M., Agostinis P., Alnemri E. S., Altucci L., Amelio I., Andrews D. W., Aqeilan R. I., Arama E., Baehrecke E. H., Balachandran S., Bano D., Barlev N. A., Bartek J., Bazan N. G., Becker C., Bernassola F., Bertrand M. J., Bianchi M. E., Blagosklonny M. V., Blander J. M., Blandino G., Blomgren K., Borner C., Bortner C. D., Bove P., Boya P., Brenner C., Broz P., Brunner T., Damgaard R. B., Calin G. A., Campanella M., Candi E., Carbone M., Carmona-Gutierrez D., Cecconi F., Chan F. K., Chen G. Q., Chen Q., Chen Y. H., Cheng E. H., Chipuk J. E., Cidlowski J. A., Ciechanover A., Ciliberto G., Conrad M., Cubillos-Ruiz J. R., Czabotar P. E., D’Angiolella V., Daugaard M., Dawson T. M., Dawson V. L., De Maria R., De Strooper B., Debatin K. M., Deberardinis R. J., Degterev A., Del Sal G., Deshmukh M., Di Virgilio F., Diederich M., Dixon S. J., Dynlacht B. D., El-Deiry W. S., Elrod J. W., Engeland K., Fimia G. M., Galassi C., Ganini C., Garcia-Saez A. J., Garg A. D., Garrido C., Gavathiotis E., Gerlic M., Ghosh S., Green D. R., Greene L. A., Gronemeyer H., Häcker G., Hajnóczky G., Hardwick J. M., Haupt Y., He S., Heery D. M., Hengartner M. O., Hetz C., Hildeman D. A., Ichijo H., Inoue S., Jäättelä M., Janic A., Joseph B., Jost P. J., Kanneganti T. D., Karin M., Kashkar H., Kaufmann T., Kelly G. L., Kepp O., Kimchi A., Kitsis R. N., Klionsky D. J., Kluck R., Krysko D. V., Kulms D., Kumar S., Lavandero S., Lavrik I. N., Lemasters J. J., Liccardi G., Linkermann A., Lipton S. A., Lockshin R. A., López-Otín C., Luedde T., MacFarlane M., Madeo F., Malorni W., Manic G., Mantovani R., Marchi S., Marine J. C., Martin S. J., Martinou J. C., Mastroberardino P. G., Medema J. P., Mehlen P., Meier P., Melino G., Melino S., Miao E. A., Moll U. M., Muñoz-Pinedo C., Murphy D. J., Niklison-Chirou M. V., Novelli F., Núñez G., Oberst A., Ofengeim D., Opferman J. T., Oren M., Pagano M., Panaretakis T., Pasparakis M., Penninger J. M., Pentimalli F., Pereira D. M., Pervaiz S., Peter M. E., Pinton P., Porta G., Prehn J. H., Puthalakath H., Rabinovich G. A., Rajalingam K., Ravichandran K. S., Rehm M., Ricci J. E., Rizzuto R., Robinson N., Rodrigues C. M., Rotblat B., Rothlin C. V., Rubinsztein D. C., Rudel T., Rufini A., Ryan K. M., Sarosiek K. A., Sawa A., Sayan E., Schroder K., Scorrano L., Sesti F., Shao F., Shi Y., Sica G. S., Silke J., Simon H. U., Sistigu A., Stephanou A., Stockwell B. R., Strapazzon F., Strasser A., Sun L., Sun E., Sun Q., Szabadkai G., Tait S. W., Tang D., Tavernarakis N., Troy C. M., Turk B., Urbano N., Vandenabeele P., Vanden Berghe T., Vander Heiden M. G., Vanderluit J. L., Verkhratsky A., Villunger A., von Karstedt S., Voss A. K., Vousden K. H., Vucic D., Vuri D., Wagner E. F., Walczak H., Wallach D., Wang R., Wang Y., Weber A., Wood W., Yamazaki T., Yang H. T., Zakeri Z., Zawacka-Pankau J. E., Zhang L., Zhang H., Zhivotovsky B., Zhou W., Piacentini M., Kroemer G. & Galluzzi L. (2023), Cell Death and Differentiation. 30, 5, p. 1097-1154
  • Life’s Emergence by Protocellular Mutually Catalytic Networks

  • How Well do Polygenic Risk Scores Identify Men at High Risk for Prostate Cancer? Systematic Review and Meta-Analysis

    Authors: Siltari A., Lönnerbro R., Pang K., Shiranov K., Asiimwe A., Evans-Axelsson S., Franks B., Kiran A., Murtola T. J., Schalken J., Steinbeisser C., Bjartell A., Auvinen A., N'Dow J., Smith E. J., Shepherd R., Ribal M., Mottet N., Moris L. & Lancet D. (2023), Clinical Genitourinary Cancer. 21, 2, p. 316.e1-316.e11
  • CGMap: Characterizing continuous glucose monitor data in thousands of non-diabetic individuals: Characterizing continuous glucose monitor data in thousands of non-diabetic individuals

    Authors: Keshet A., Shilo S., Godneva A., Talmor-Barkan Y., Aviv Y., Segal E. & Rossman H. (2023), Cell Metabolism. 35, 5, p. 758-769.e3
  • Head-to-head efficacy and safety of rivaroxaban, apixaban, and dabigatran in an observational nationwide targeted trial

    Authors: Talmor-Barkan Y., Yacovzada N., Rossman H., Witberg G., Kalka I., Kornowski R. & Segal E. (2023), European heart journal. Cardiovascular pharmacotherapy. 9, 1, p. 26-37
  • Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire

    Authors: Andreu-Sánchez S., Bourgonje A. R., Vogl T., Kurilshikov A., Leviatan S., Ruiz-Moreno A. J., Hu S., Sinha T., Vich Vila A., Klompus S., Kalka I. N., de Leeuw K., Arends S., Jonkers I., Withoff S., Brouwer E., Weinberger A., Wijmenga C., Segal E. & Weersma R. K. (2023), Immunity. 56, 6, p. 1376-1392
  • Allergenic food protein consumption is associated with systemic IgG antibody responses in non-allergic individuals

    Authors: Leviatan S., Vogl T., Klompus S., Kalka I. N., Weinberger A. & Segal E. (2022), Immunity. 55, 12, p. 2454-2469.e6
  • An expanded reference map of the human gut microbiome reveals hundreds of previously unknown species

    Authors: Leviatan S., Shoer S., Rothschild D., Gorodetski M. & Segal E. (2022), Nature Communications. 13, 3863
  • Soluble Receptor for Advanced Glycation End Products (sRAGE) Isoforms Predict Changes in Resting Energy Expenditure in Adults with Obesity during Weight Loss

    Authors: Popp C. J., Zhou B., Manigrasso M. B., Li H., Curran M., Hu L., St-Jules D. E., Alemán J. O., Vanegas S. M., Jay M., Bergman M., Segal E., Sevick M. A. & Schmidt A. M. (2022), Current Developments in Nutrition. 6, 5, nzac046
  • Genome-Wide Association Analysis of Over 170,000 Individuals from the UK Biobank Identifies Seven Loci Associated with Dietary Approaches to Stop Hypertension (DASH) Diet

    Authors: Mompeo O., Freidin M. B., Gibson R., Hysi P. G., Christofidou P., Segal E., Valdes A. M., Spector T. D., Menni C. & Mangino M. (2022), Nutrients. 14, 20, 4431
  • Systemic antibody responses against human microbiota flagellins are overrepresented in chronic fatigue syndrome patients

    Authors: Vogl T., Kalka I. N., Klompus S., Leviatan S., Weinberger A. & Segal E. (2022), Science advances. 8, 38, eabq2422
  • BIPS—A code base for designing and coding of a Phage ImmunoPrecipitation Oligo Library

    Authors: Leviatan S., Kalka I. N., Vogl T., Klompas S., Weinberger A. & Segal E. (2022), PLoS Computational Biology. 18, 11, e1010663
  • Antibody signatures in inflammatory bowel disease: current developments and future applications

    Authors: Bourgonje A. R., Vogl T., Segal E. & Weersma R. K. (2022), Trends in Molecular Medicine. 28, 8, p. 693-705
  • Effects of personalized diets by prediction of glycemic responses on glycemic control and metabolic health in newly diagnosed T2DM: a randomized dietary intervention pilot trial

    Authors: Rein M., Ben-Yacov O., Godneva A., Shilo S., Zmora N., Kolobkov D., Cohen-Dolev N., Wolf B., Kosower N., Lotan-Pompan M., Weinberger A., Halpern Z., Zelber-Sagi S., Elinav E. & Segal E. (2022), BMC Medicine. 20, 56
  • Prediction of type 2 diabetes mellitus onset using logistic regression-based scorecards

    Authors: Edlitz Y. & Segal E. (2022), eLife. 11, e71862
  • BREAst Cancer Personalised NuTrition (BREACPNT): dietary intervention in breast cancer survivors treated with endocrine therapy – a protocol for a randomised clinical trial

    Authors: Rein M. S., Dadiani M., Godneva A., Bakalenik-Gavry M., Morzaev-Sulzbach D., Vachnish Y., Kolobkov D., Lotan-Pompan m., Weinberger A., Segal E. & Gal-Yam E. N. (2022), BMJ Open. 12, 11, e062498
  • Prediction of Personal Glycemic Responses to Food for Individuals With Type 1 Diabetes Through Integration of Clinical and Microbial Data

    Authors: Shilo S., Godneva A., Rachmiel M., Korem T., Kolobkov D., Karady T., Bar N., Wolf B. C., Glantz-Gashai Y., Cohen M., Zuckerman Levin N., Shehadeh N., Gruber N., Levran N., Koren S., Weinberger A., Pinhas-Hamiel O. & Segal E. (2022), Diabetes Care. 45, 3, p. 502-511
  • Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3′UTR protect against ALS

    Authors: Eitan C., Siany A., Barkan E., Olender T., Yanowski E., Marmor-Kollet H., Chapnik E., Ainbinder E., Ben-Dor S., Segal E. & Hornstein E. (2022), Nature Neuroscience. 25, 4, p. 433-445
  • Phenotypic correlates of the working dog microbiome

    Authors: Craddock H. A., Godneva A., Rothschild D., Motro Y., Grinstein D., Lotem-Michaeli Y., Narkiss T., Segal E. & Moran-Gilad J. (2022), npj Biofilms and Microbiomes. 8, 66
  • Recording bacterial responses to changes in the gut environment

  • Effect of a Personalized Diet to Reduce Postprandial Glycemic Response vs a Low-fat Diet on Weight Loss in Adults with Abnormal Glucose Metabolism and Obesity: A Randomized Clinical Trial

    Authors: Popp C. J., Hu L., Kharmats A. Y., Curran M., Berube L., Wang C., Pompeii M. L., Illiano P., St-Jules D. E., Mottern M., Li H., Williams N., Schoenthaler A., Segal E., Godneva A., Thomas D., Bergman M., Schmidt A. M. & Sevick M. A. (2022), JAMA network open. 5, 9
  • Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance

    Authors: Suez J., Cohen Y., Valdés-Mas R., Mor U., Dori-Bachash M., Federici S., Zmora N., Leshem A., Heinemann M., Linevsky R., Zur M., Ben-Zeev Brik R., Bukimer A., Eliyahu-Miller S., Metz A., Fischbein R., Sharov O., Malitsky S., Itkin M., Stettner N., Harmelin A., Shapiro H., Stein-Thoeringer C. K., Segal E. & Elinav E. (2022), Cell. 185, 18, p. 3307-3328.e19
  • Microbiome and metabolome features of the cardiometabolic disease spectrum

    Authors: Fromentin S., Forslund S. K., Chechi K., Bar N. & Segal E. (2022), Nature Medicine. 28, 2, p. 303-314
  • Micellar Composition Affects Lipid Accretion Kinetics in Molecular Dynamics Simulations: Support for Lipid Network Reproduction

    Authors: Kahana A., Lancet D. & Palmai Z. (2022), Life (Basel, Switzerland). 12, 7, 955
  • The Gut Microbiome of Adults With Type 1 Diabetes and Its Association With the Host Glycemic Control

    Authors: Shilo S., Godneva A., Rachmiel M., Korem T., Bussi Y., Kolobkov D., Karady T., Bar N., Wolf B. C., Glantz-Gashai Y., Cohen M., Levin N. Z., Shehadeh N., Gruber N., Levran N., Koren S., Weinberger A., Pinhas-Hamiel O. & Segal E. (2022), Diabetes Care. 45, 3, p. 555-563
  • Metabolomic and microbiome profiling reveals personalized risk factors for coronary artery disease

    Authors: Talmor-Barkan Y., Bar N., Shaul A. A., Shahaf N., Godneva A., Bussi Y., Lotan-Pompan M., Weinberger A., Shechter A., Chezar-Azerrad C., Arow Z., Hammer Y., Chechi K., Forslund S. K., Fromentin S., Dumas M., Ehrlich S. D., Pedersen O., Kornowski R. & Segal E. (2022), Nature Medicine. 28, 2, p. 295-302
  • Research gaps and opportunities in precision nutrition: an NIH workshop report

    Authors: Lee B. Y., Ordovás J. M., Parks E. J., Anderson C. A., Barabási A. L., Clinton S. K., de la Haye K., Duffy V. B., Franks P. W., Ginexi E. M., Hammond K. J., Hanlon E. C., Hittle M., Ho E., Horn A. L., Isaacson R. S., Mabry P. L., Malone S., Martin C. K., Mattei J., Meydani S. N., Nelson L. M., Neuhouser M. L., Parent B., Pronk N. P., Roche H. M., Saria S., Scheer F. A., Segal E., Sevick M. A., Spector T. D., Van Horn L., Varady K. A., Voruganti V. S. & Martinez M. F. (2022), The American journal of clinical nutrition. 116, 6, p. 1877-1900
  • Estimating the effect of cesarean delivery on long-term childhood health across two countries

    Authors: Keshet A., Rossman H., Shilo S., Barbash-Hazan S., Amit G., Bivas-Benita M., Yanover C., Girshovitz I., Akiva P., Ben-Haroush A., Hadar E., Wiznitzer A. & Segal E. (2022), PLoS ONE. 17, 10, e0268103
  • DOP53 In-depth characterisation of the serum antibody epitope repertoire in Inflammatory Bowel Disease by high-throughput phage-displayed immunoprecipitation sequencing

    Authors: Bourgonje A. R., Andreu-Sánchez S., Vogl T., Hu S., Vich Vila A., Leviatan S., Kurilshikov A., Klompus S., Kalka I. N., van Dullemen H. M., Weinberger A., Visschedijk M. C., Festen E. A. M., Faber K. N., Wijmenga C., Dijkstra G., Segal E., Fu J., Zhernakova A. & Weersma R. K. (2022), Journal of Crohn's and Colitis. 16, Supplement_1, p. i100-i102
  • Nowcasting the spread of SARS-CoV-2

    Authors: Rossman H. & Segal E. (2022),
  • An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents

    Authors: Rothschild D., Leviatan S., Hanemann A., Cohen Y., Weissbrod O. & Segal E. (2022), PLoS ONE. 17, 3 March, e0265756
  • The GeneCards Suite

    Authors: Safran M., Rosen N., Twik M., BarShir R., Stein T. I., Dahary D., Fishilevich S. & Lancet D. (2022), Practical Guide to Life Science Databases. p. 27-56
  • Pls1 Is a Peroxisomal Matrix Protein with a Role in Regulating Lysine Biosynthesis

    Authors: David Y., Castro I. G., Yifrach E., Bibi C., Katawi E., Har-Shai D. Y., Brodsky S., Barkai N., Ravid T., Eisenstein M., Pietrokovski S., Schuldiner M. & Zalckvar E. (2022), Cells. 11, 9, 1426
  • Clinical efficacy of fecal microbial transplantation treatment in adults with moderate-to-severe atopic dermatitis

    Authors: Mashiah J., Karady T., Fliss-Isakov N., Sprecher E., Slodownik D., Artzi O., Samuelov L., Ellenbogen E., Godneva A., Segal E. & Maharshak N. (2022), Immunity, inflammation and disease. 10, 3, e570
  • New Approaches to Profile the Microbiome for Treatment of Neurodegenerative Disease

    Authors: Elmaleh D. R., Downey M. A., Kundakovic L., Wilkinson J. E., Neeman Z. & Segal E. (2022), Handbook of Microbiome and Gut-Brain-Axis in Alzheimer's Disease. Pasinetti G. M. (eds.). p. 117-145
  • Evidence for cutaneous dysbiosis in dystrophic epidermolysis bullosa

    Authors: Bar J., Sarig O., Lotan-Pompan M., Dassa B., Miodovnik M., Weinberger A., Sprecher E., Segal E. & Samuelov L. (2021), Clinical and Experimental Dermatology. 46, 7, p. 1223-1229
  • SARS-CoV-2 antibody testing for estimating COVID-19 prevalence in the population

    Authors: Vogl T., Leviatan S. & Segal E. (2021), Cell Reports Medicine. 2, 2, 100191
  • Structured elements drive extensive circular RNA translation

    Authors: Chen C. K., Cheng R., Demeter J., Chen J., Weingarten-Gabbay S., Jiang L., Snyder M. P., Weissman J. S., Segal E., Jackson P. K. & Chang H. Y. (2021), Molecular Cell. 81, 20, p. 4300-4318.e13
  • Estimating heritability of glycaemic response to metformin using nationwide electronic health records and population-sized pedigree

    Authors: Kalka I. N., Gavrieli A., Shilo S., Rossman H., Artzi N. S., Yacovzada N. & Segal E. (2021), Communications Medicine. 1, 1, 55
  • Identification of bacteria-derived HLA-bound peptides in melanoma

    Authors: Kalaora S., Nagler A., Nejman D., Alon M., Barbolin C., Barnea E., Ketelaars S. L. C., Cheng K., Vervier K., Shental N., Bussi Y., Rotkopf R., Levy R., Benedek G., Trabish S., Dadosh T., Levin-Zaidman S., Geller L. T., Wang K., Greenberg P., Yagel G., Peri A., Fuks G., Bhardwaj N., Reuben A., Hermida L., Johnson S. B., Galloway-Peña J. R., Shropshire W. C., Bernatchez C., Haymaker C., Arora R., Roitman L., Eilam R., Weinberger A., Lotan-Pompan M., Lotem M., Levin Y., Lawley T. D., Adams D. J., Levesque M. P., Besser M. J., Schachter J., Golani O., Segal E., Ruppin E., Kvistborg P., Peterson S. N., Wargo J. A., Straussman R. & Samuels Y. (2021), Nature (London). 592, 7852, p. 138-143
  • GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite

    Authors: Barshir R., Fishilevich S., Iny-Stein T., Zelig O., Mazor Y., Guan-Golan Y., Safran M. & Lancet D. (2021), Journal of Molecular Biology. 433, 11, 166913
  • The gut microbiome: a key player in the complexity of amyotrophic lateral sclerosis (ALS)

    Authors: Boddy S. L., Giovannelli I., Sassani M., Cooper-Knock J., Snyder M. P., Segal E., Elinav E., Barker L. A., Shaw P. J. & McDermott C. J. (2021), BMC Medicine. 19, 1, 13
  • Personalized Postprandial Glucose Response–Targeting Diet Versus Mediterranean Diet for Glycemic Control in Prediabetes

    Authors: Ben-Yacov O., Godneva A., Rein M., Shilo S., Kolobkov D., Koren N., Cohen Dolev N., Travinsky Shmul T., Wolf B. C., Kosower N., Sagiv K., Lotan-Pompan M., Zmora N., Weinberger A., Elinav E. & Segal E. (2021), Diabetes Care. 44, 9, p. 1980-1991
  • Diversity and functional landscapes in the microbiota of animals in the wild

    Authors: Levin D., Raab N., Pinto Y., Rothschild D., Zanir G., Godneva A., Mellul N., Futorian D., Gal D., Leviatan S., Zeevi D., Bachelet I. & Segal E. (2021), Science. 372, 6539, eabb5352
  • Self-reproducing catalytic micelles as nanoscopic protocell precursors

    Authors: Kahana A. & Lancet D. (2021), Nature reviews. Chemistry. 5, 12, p. 870-878
  • Potential role of indolelactate and butyrate in multiple sclerosis revealed by integrated microbiome-metabolome analysis

    Authors: Levi I., Gurevich M., Perlman G., Magalashvili D., Menascu S., Bar N., Godneva A., Zahavi L., Chermon D., Kosower N., Wolf B. C., Malka G., Lotan-Pompan M., Weinberger A., Yirmiya E., Rothschild D., Leviatan S., Tsur A., Didkin M., Dreyer S., Eizikovitz H., Titngi Y., Mayost S., Sonis P., Dolev M., Stern Y., Achiron A. & Segal E. (2021), Cell Reports Medicine. 2, 4, 100246
  • Hospital load and increased COVID-19 related mortality in Israel

    Authors: Rossman H., Meir T., Somer J., Shilo S., Gutman R., Ben Arie A., Segal E., Shalit U. & Gorfine M. (2021), Nature Communications. 12, 1, 1904
  • Cross-reactive antibodies against human coronaviruses and the animal coronavirome suggest diagnostics for future zoonotic spillovers

    Authors: Klompus S., Leviatan S., Vogl T., Mazor R., Kalka I., Stoler-Barak L., Nathan N., Peres A., Moss L., Godneva A., Kagan Ben Tikva S., Shinar E., Dvashi H. C., Gabizon R., London N., Diskin R., Yaari G., Weinberger A., Shulman Z. & Segal E. (2021), Science immunology. 6, 61, eabe9950
  • 10 K: a large‐scale prospective longitudinal study in Israel

    Authors: Shilo S., Bar N., Keshet A., Talmor-Barkan Y., Rossman H., Godneva A., Aviv Y., Edlitz Y., Reicher L., Kolobkov D., Wolf B. C., Lotan-Pompan M., Levi K., Cohen O., Saranga H., Weinberger A. & Segal E. (2021), European Journal of Epidemiology. 36, 11, p. 1187-1194
  • COVID-19 dynamics after a national immunization program in Israel

    Authors: Rossman H., Shilo S., Meir T., Gorfine M., Shalit U. & Segal E. (2021), Nature Medicine. 27, p. 1055-1061
  • Population-wide diversity and stability of serum antibody epitope repertoires against human microbiota

    Authors: Thomas V., Shelley K., Sigal L., N K. I., Adina W., Cisca W., Jingyuan F., Alexandra Z., K W. R. & Segal E. (2021), Nature Medicine. 27, 8, p. 1442-1450
  • Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study

    Authors: Sudre C. H., Keshet A., Graham M. S., Joshi A. D., Shilo S., Rossman H., Murray B., Molten E., Klaser K., Canas L. D., Antonelli M., Nguyen L. H., Drew D. A., Modat M., Pujol J. C., Ganesh S., Wolf J., Meir T., Chan A. T., Steves C. J., Spector T. D., Brownstein J. S., Segal E., Ourselin S. & Astley C. M. (2021), The Lancet. Digital health. 3, 9, p. e577-e586
  • New Approaches to Profile the Microbiome for Treatment of Neurodegenerative Disease

    Authors: Elmaleh D. R., Downey M. A., Kundakovic L., Wilkinson J. E., Neeman Z. & Segal E. (2021), Journal of Alzheimer's Disease. 82, 4, p. 1373-1401
  • A Prediction Model to Prioritize Individuals for a SARS-CoV-2 Test Built from National Symptom Surveys

    Authors: Shoer S., Karady T., Keshet A., Shilo S., Rossman H., Gavrieli A., Meir T., Lavon A., Kolobkov D., Kalka I., Godneva A., Cohen O., Kariv A., Hoch O., Zer-Aviv M., Castel N., Sudre C., Zohar A. E., Irony A., Spector T., Geiger B., Hizi D., Shalev V., Balicer R. & Segal E. (2021), Med. 2, 2, p. 196-208.e4
  • Stress-related emotional and behavioural impact following the first COVID-19 outbreak peak

    Authors: Benjamin A., Kuperman Y., Eren N., Rotkopf R., Amitai M., Rossman H., Shilo S., Meir T., Keshet A., Nuttman-Shwartz O., Segal E. & Chen A. (2021), Molecular Psychiatry. 26, 11, p. 6149-6158
  • Dynamic lipid aptamers: non-polymeric chemical path to early life

    Authors: Kahana A., Maslov S. & Lancet D. (2021), Chemical Society Reviews. 50, 21, p. 11741-11746
  • Prediction of Childhood Obesity from Nationwide Health Records

    Authors: Rossman H., Shilo S., Barbash-Hazan S., Artzi N. S., Hadar E., Balicer R. D., Feldman B., Wiznitzer A. & Segal E. (2021), Journal of Pediatrics. 233, p. 132-140.e1
  • The long-term genetic stability and individual specificity of the human gut microbiome

    Authors: Chen L., Wang D., Garmaeva S., Kurilshikov A. & Segal E. (2021), Cell. 184, 9, p. 2302-2315.e12
  • Editor Profile: Eli Arama

    Authors: Arama E. (2021), The FEBS journal. 288, 22, p. 6310-6314
  • Unified platform for genetic and serological detection of COVID-19 with single-molecule technology

    Authors: Furth N., Shilo S., Cohen N., Erez N., Fedyuk V., Schrager A. M., Weinberger A., Dror A. A., Zigron A., Shehadeh M., Sela E., Srouji S., Amit S., Levy I., Segal E., Dahan R., Jones D., Douek D. C. & Shema E. (2021), PLoS ONE. 16, 7, e0255096
  • Signals of hope: gauging the impact of a rapid national vaccination campaign

    Authors: Shilo S., Rossman H. & Segal E. (2021),
  • Reporting guidelines for human microbiome research: the STORMS checklist

    Authors: Elinav E. & Segal E. (2021), Nature Medicine. 27, 11, p. 1885-1892
  • DNase II mediates a parthanatos-like developmental cell death pathway in Drosophila primordial germ cells

    Authors: Tarayrah-Ibraheim L., Maurice E. C., Hadary G., Ben-Hur S., Kolpakova A., Braun T., Peleg Y., Yacobi-Sharon K. & Arama E. (2021), Nature Communications. 12, 1, 2285
  • Large-scale association analyses identify host factors influencing human gut microbiome composition

    Authors: Kurilshikov A., Medina-Gomez C., Bacigalupe R., Barkan E., Segal E. & Rothschild Bup D. (2021), Nature Genetics. 53, 2, p. 156-165
  • Challenges of conducting a remote behavioral weight loss study: Lessons learned and a practical guide

    Authors: Hu L., Illiano P., Pompeii M. L., Popp C. J., Kharmats A. Y., Curran M., Perdomo K., Chen S., Bergman M., Segal E. & Sevick M. A. (2021), Contemporary Clinical Trials. 108, 106522
  • Biochemical and Structural Characterization of an Unusual and Naturally Split Class 3 Intein

    Authors: Hoffmann S., Terhorst T. M. E., Singh R. K., Kuemmel D., Pietrokovski S. & Mootz H. D. (2020), ChemBioChem. 2, p. 364-373
  • Rationale and design of a randomised controlled trial testing the effect of personalised diet in individuals with pre-diabetes or type 2 diabetes mellitus treated with metformin

    Authors: Htet T. D., Godneva A., Liu Z., Chalmers E., Kolobkov D., Snaith J. R., Richens R., Toth K., Danta M., Hng T. M., Elinav E., Segal E., Greenfield J. R. & Samocha-Bonet D. (2020), BMJ Open. 10, 10, e037859
  • Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth

    Authors: Wang Y., Nudel R., Benros M. E., Skogstrand K., Fishilevich S. & Lancet D. (2020), PLoS Genetics. 16, 11, e1009163
  • A reference map of potential determinants for the human serum metabolome

    Authors: Bar N., Korem T., Weissbrod O., Zeevi D., Rothschild Bup D., Peled-Leviatan S., Kosower N., Lotan-Pompan M., Weinberger A. & Segal E. (2020), Nature. 588, 7836, p. 135-140
  • Building an international consortium for tracking coronavirus health status

    Authors: Segal E., Zhang F., Lin X., King G., Shalem O., Shilo S., Allen W. E., Alquaddoomi F., Altae-Tran H., Anders S., Balicer R., Bauman T., Bonilla X., Booman G., Chan A. T., Cohen O., Coletti S., Davidson N., Dor Y., Drew D. A., Elemento O., Evans G., Ewels P., Gale J., Gavrieli A., Grad Y. H., Greene C. S., Hajirasouliha I., Jerala R., Kahles A., Kallioniemi O., Keshet A., Kocarev L., Landua G., Meir T., Muller A., Nguyen L. H., Oresic M., Ovchinnikova S., Peterson H., Prodanova J., Rajagopal J., Ratsch G., Rossman H., Rung J., Sboner A., Sigaras A., Spector T., Steinherz R., Stevens I., Vilo J. & Wilmes P. (2020),
  • Axes of a revolution: challenges and promises of big data in healthcare

    Authors: Shilo S., Rossman H. & Segal E. (2020), Nature Medicine. 26, 1, p. 29-38
  • A framework for identifying regional outbreak and spread of COVID-19 from one-minute population-wide surveys

    Authors: Rossman H., Keshet A., Shilo S., Gavrieli A., Bauman T., Cohen O., Shelly E., Balicer R., Geiger B., Dor Y. & Segal E. (2020), Nature Medicine. 26, 5, p. 634-638
  • The human tumor microbiome is composed of tumor type-specific intracellular bacteria

    Authors: Nejman D., Livyatan I., Fuks G., Gavert N., Zwang Y., Geller L. T., Rotter-Maskowitz A., Weiser R., Mallel G., Gigi E., Meltser A., Douglas G. M., Kamer I., Gopalakrishnan V., Dadosh T., Levin-Zaidman S., Avnet S., Atlan T., Cooper Z. A., Arora R., Cogdill A. P., Khan M. A. W., Ologun G., Bussi Y., Weinberger A., Lotan-Pompan M., Golani O., Perry G., Rokah M., Bahar-Shany K., Rozeman E. A., Blank C. U., Ronai A., Shaoul R., Amit A., Dorfman T., Kremer R., Cohen Z. R., Harnof S., Siegal T., Yehuda-Shnaidman E., Gal-Yam E. N., Shapira H., Baldini N., Langille M. G. I., Ben-Nun A., Kaufman B., Nissan A., Golan T., Dadiani M., Levanon K., Bar J., Yust-Katz S., Barshack I., Peeper D. S., Raz D. J., Segal E., Wargo J. A., Sandbank J., Shental N. & Straussman R. (2020), Science. 368, 6494, p. 973-980
  • Rare Variant Burden Analysis within Enhancers Identifies CAV1 as an ALS Risk Gene

    Authors: Cooper-Knock J., Zhang S., Yacovzada N. S., Eitan C., Hornstein E., Fishilevich S. & Lancet D. (2020), Cell Reports. 33, 9, 108456
  • The gut microbiome and individual-specific responses to diet

    Authors: Leshem A., Segal E. & Elinav E. (2020), mSystems. 5, 5, e00665-20
  • High-throughput interrogation of programmed ribosomal frameshifting in human cells

    Authors: Mikl M., Pilpel Y. & Segal E. (2020), Nature Communications. 11, 1, 3061
  • Visualizing the structure and motion of the long noncoding RNA HOTAIR

    Authors: Spokoini-Stern R., Stamov D., Jessel H., Aharoni L., Haschke H., Giron J., Unger R., Segal E., Abu-Horowitz A. & Bachelet I. (2020), RNA. 26, 5, p. 629-636
  • Introducing PIONEER: a project to harness big data in prostate cancer research

    Authors: Omar M. I., Roobol M. J., Ribal M. J., Abbott T. & Lancet D. (2020), Nature Reviews Urology. 17, 6, p. 351-361
  • The road ahead in genetics and genomics

    Authors: McGuire A. L., Gabriel S., Tishkoff S. A., Wonkam A., Chakravarti A., Furlong E. E. M., Treutlein B., Meissner A., Chang H. Y., Lopez-Bigas N., Segal E. & Kim J. (2020), Nature Reviews Genetics. 21, 10, p. 581-596
  • A unified nomenclature for vertebrate olfactory receptors

    Authors: Olender T., Jones T. E. M., Bruford E. & Lancet D. (2020), BMC Evolutionary Biology. 20, 1, p. 42, 42
  • Gene Architecture and Sequence Composition Underpin Selective Dependency of Nuclear Export of Long RNAs on NXF1 and the TREX Complex

    Authors: Zuckerman B., Ron M., Mikl M., Segal E. & Ulitsky I. (2020), Molecular Cell. 79, 2, p. 251-267
  • Non-lethal message from the Holy Land: The first international conference on nonapoptotic roles of apoptotic proteins

    Authors: Arama E., Baena-Lopez L. A. & Fearnhead H. O. (2020), FEBS Journal.
  • Identifying gut microbes that affect human health

    Authors: Leviatan S. & Segal E. (2020),
  • Clinically Accurate Prediction of Glucose Levels in Patients with Type 1 Diabetes

    Authors: Amar Y., Shilo S., Oron T., Amar E., Phillip M. & Segal E. (2020), Diabetes Technology and Therapeutics. 22, 8, p. 562-569
  • Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome

    Authors: Mars R. A. T., Ward T., Houtti M., Priya S., Lekatz H. R., Tang X., Sun Z., Kalari K. R., Bhattarai Y., Zheng T., Bar N., Frost G., Johnson A. J., van Treuren W., Han S., Ordog T., Grover M., Sonnenburg J., D'Amato M., Camilleri M., Elinav E., Segal E., Blekhman R., Farrugia G., Swann J. R., Knights D. & Kashyap P. C. (2020), Cell. 182, 6, p. 1460-1473
  • Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome (vol 182, pg 1460, 2020): Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome (Cell (2020) 182(6) (1460–1473.e17), (S0092867420309983), (10.1016/j.cell.2020.08.007))

    Authors: Mars R. A., Yang Y., Ward T., Houtti M., Priya S., Lekatz H. R., Tang X., Sun Z., Kalari K. R., Korem T., Bhattarai Y., Zheng T., Bar N., Frost G., Johnson A. J., van Treuren W., Han S., Ordog T., Grover M., Sonnenburg J., D'Amato M., Camilleri M., Elinav E., Segal E., Blekhman R., Farrugia G., Swann J. R., Knights D. & Kashyap P. C. (2020),
  • Prediction of gestational diabetes based on nationwide electronic health records

    Authors: Artzi N. S., Shilo S., Hadar E., Rossman H., Barbash-Hazan S., Ben-Haroush A., Balicer R. D., Feldman B., Wiznitzer A. & Segal E. (2020),
  • Rich data sets could end costly drug discovery

    Authors: Segal E. (2020),
  • Longitudinal symptom dynamics of COVID-19 infection

    Authors: Mizrahi B., Shilo S., Rossman H., Kalkstein N., Marcus K., Barer Y., Keshet A., Shamir-Stein N., Shalev V., Zohar A. E., Chodick G. & Segal E. (2020), Nature Communications. 11, 1, 6208
  • A new MEIOB mutation is a recurrent cause for azoospermia and testicular meiotic arrest

    Authors: Gershoni M., Hauser R., Barda S., Lehavi O., Arama E., Pietrokovski S. & Kleiman S. E. (2019), Human Reproduction. 34, 4, p. 666-671
  • Noncoding deletions reveal a gene that is critical for intestinal function

    Authors: Oz-Levi D., Olender T., Bar-Joseph I., Zhu Y., Marek-Yagel D., Barozzi I., Osterwalder M., Alkelai A., Ruzzo E. K., Han Y., Vos E. S. M., Reznik-Wolf H., Hartman C., Shamir R., Weiss B., Shapiro R., Pode-Shakked B., Tatarskyy P., Milgrom R., Schvimer M., Barshack I., Imai D. M., Coleman-Derr D., Dickel D. E., Nord A. S., Afzal V., van Bueren K. L., Barnes R. M., Black B. L., Mayhew C. N., Kuhar M. F., Pitstick A., Tekman M., Stanescu H. C., Wells J. M., Kleta R., de laat W., Goldstein D. B., Pras E., Visel A., Lancet D., Anikster Y. & Pennacchio L. A. (2019),
  • Potential roles of gut microbiome and metabolites in modulating ALS in mice

    Authors: Blacher E., Bashiardes S., Shapiro H., Rothschild D., Mor U., Dori-Bachash M., Kleimeyer C., Moresi C., Harnik Y., Zur M., Zabari M., Brik R. B., Kviatcovsky D., Zmora N., Cohen Y., Bar N., Levi I., Amar N., Mehlman T., Brandis A., Biton I., Kuperman Y., Tsoory M., Alfahel L., Harmelin A., Schwartz M., Israelson A., Arike L., Johansson M. E. V., Hansson G. C., Gotkine M., Segal E. & Elinav E. (2019), Nature. 572, 7770, p. 474-480
  • Genome analysis and knowledge-driven variant interpretation with TGex

    Authors: Dahary D., Golan Y., Mazor Y., Zelig O., Barshir R., Twik M., Stein T. I., Rosner G., Kariv R., Chen F., Zhang Q., Shen Y., Safran M., Lancet D. & Fishilevich S. (2019), BMC Medical Genomics. 12, 1, 200
  • Systematic interrogation of human promoters

    Authors: Weingarten-Gabbay S., Nir R., Lubliner S., Sharon E., Kalma Y., Weinberger A. & Segal E. (2019), Genome Research. 29, 2, p. 171-183
  • The rationale and design of the personal diet study, a randomized clinical trial evaluating a personalized approach to weight loss in individuals with pre-diabetes and early-stage type 2 diabetes

    Authors: Popp C. J., St-Jules D. E., Hu L., Ganguzza L., Illiano P., Curran M., Li H., Schoenthaler A., Bergman M., Schmidt A. M., Segal E., Godneva A. & Sevick M. A. (2019), Contemporary Clinical Trials. 79, p. 80-88
  • Protobiotic Systems Chemistry Analyzed by Molecular Dynamics

    Authors: Kahana A. & Lancet D. (2019), Life. 9, 2, 38
  • Enceladus: First Observed Primordial Soup Could Arbitrate Origin-of-Life Debate

    Authors: Kahana A., Schmitt-Kopplin P. & Lancet D. (2019), Astrobiology. 10, p. 1263-1278
  • Dissecting splicing decisions and cell-to-cell variability with designed sequence libraries

    Authors: Mikl M., Hamburg A., Pilpel Y. & Segal E. (2019), Nature Communications. 10, 4572
  • A cancer associated somatic mutation in LC3B attenuates its binding to E1-like ATG7 protein and subsequent lipidation

    Authors: Nuta G. C., Gilad Y., Gershoni M., Sznajderman A., Schlesinger T., Bialik S., Eisenstein M., Pietrokovski S. & Kimchi A. (2019), Autophagy. 15, 3, p. 438-452
  • The pros, cons, and many unknowns of probiotics

    Authors: Suez J., Zmora N., Segal E. & Elinav E. (2019), Nature Medicine. 25, 5, p. 716-729
  • Erratum: Deciphering the rules by which 5′-UTR sequences affect protein expression in yeast (Proceedings of the National Academy of Sciences of the United States of America (2013) 110 (E2792–E2801) DOI: 10.1073/pnas.1222534110)

    Authors: Dvir S., Velten L., Sharon E., Zeevi D., Carey L. B., Weinberger A. & Segal E. (2019), Proceedings of the National Academy of Sciences of the United States of America. 116, 27, p. 13701
  • Sequence determinants of polyadenylation-mediated regulation

    Authors: Slutskin I. V., Weinberger A. & Segal E. (2019), Genome Research. 29, 10, p. 1635-1647
  • A mesophilic cysteine-less split intein for protein trans-splicing applications under oxidizing conditions

    Authors: Bhagawati M., Terhorst T. M. E., Fuesser F., Hoffmann S., Pasch T., Pietrokovski S. & Mootz H. D. (2019), Proceedings of the National Academy of Sciences of the United States of America. 116, 44, p. 22164-22172
  • Environment dominates over host genetics in shaping human gut microbiota

    Authors: Rothschild D., Weissbrod O., Barkan E., Kurilshikov A., Korem T., Zeevi D., Costea P. I., Godneva A., Kalka I. N., Bar N., Shilo S., Lador D., Vila A. V., Zmora N., Pevsner-Fischer M., Israeli D., Kosower N., Malka G., Wolf B. C., Avnit-Sagi T., Lotan-Pompan M., Weinberger A., Halpern Z., Carmi S., Fu J., Wijmenga C., Zhernakova A., Elinav E. & Segal E. (2018), Nature. 555, 7695, p. 210-215
  • What Can Immunologists Learn from Systems Approaches?

    Authors: Segal E., Vogl T., Klompus S., Peled-Leviatan S. & Weinberger A. (2018),
  • International conference on Cell Death in Cancer and Toxicology 2018 (CDCT-2018)

    Authors: Ansari K. M., Arany P. R., Arama E., Larisch S., Birge R. B. & Chandra D. (2018), Cell Communication and Signaling. 16, 34
  • Role of the gut microbiota in nutrition and health

    Authors: Valdes A. M., Walter L., Segal E. & Spector T. D. (2018), British Medical Journal. 361, 2179
  • The Helix Twist: Damage and Repair Follows the DNA Minor Groove

    Authors: Kotler E. & Segal E. (2018), Cell. 175, 4, p. 902-904
  • Probiotics administration following sleeve gastrectomy surgery: a randomized double-blind trial

    Authors: Sherf-Dagan S., Zelber-Sagi S., Zilberman-Schapira G., Webb M., Buch A., Keidar A., Raziel A., Sakran N., Goitein D., Goldenberg N., Mahdi J. A., Pevsner-Fischer M., Zmora N., Dori-Bachash M., Segal E., Elinav E. & Shibolet O. (2018), International Journal of Obesity. 42, 2, p. 147-155
  • Prediction of acute myeloid leukaemia risk in healthy individuals

    Authors: Abelson S., Collord G., Ng S. W. K., Weissbrod O., Mendelson Cohen N., Niemeyer E., Barda N., Zuzarte P. C., Heisler L., Sundaravadanam Y., Luben R., Hayat S., Wang T. T., Zhao Z., Cirlan I., Pugh T. J., Soave D., Ng K., Latimer C., Hardy C., Raine K., Jones D., Hoult D., Britten A., McPherson J. D., Johansson M., Mbabaali F., Eagles J., Miller J. K., Pasternack D., Timms L., Krzyzanowski P., Awadalla P., Costa R., Segal E., Bratman S. V., Beer P., Behjati S., Martincorena I., Wang J. C. Y., Bowles K. M., Quirós J. R., Karakatsani A., La Vecchia C., Trichopoulou A., Salamanca-Fernández E., Huerta J. M., Barricarte A., Travis R. C., Tumino R., Masala G., Boeing H., Panico S., Kaaks R., Krämer A., Sieri S., Riboli E., Vineis P., Foll M., McKay J., Polidoro S., Sala N., Khaw K., Vermeulen R., Campbell P. J., Papaemmanuil E., Minden M. D., Tanay A., Balicer R. D., Wareham N. J., Gerstung M., Dick J. E., Brennan P., Vassiliou G. S. & Shlush L. I. (2018), Nature. 559, 7714, p. 400-404
  • Mutations in AIFM1 cause an X-linked childhood cerebellar ataxia partially responsive to riboflavin

    Authors: Heimer G., Eyal E., Zhu X., Ruzzo E. K., Marek-Yagel D., Sagiv D., Anikster Y., Reznik-Wolf H., Pras E., Levi D. O., Lancet D., Ben-Zeev B. & Nissenkorn A. (2018), European Journal of Paediatric Neurology. 22, 1, p. 93-101
  • Replication of Simulated Prebiotic Amphiphilic Vesicles in a Finite Environment Exhibits Complex Behavior That Includes High Progeny Variability and Competition

    Authors: Armstrong D. L., Lancet D. & Zidovetzki R. (2018), Astrobiology. 18, 4, p. 419-430
  • A Systematic p53 Mutation Library Links Differential Functional Impact to Cancer Mutation Pattern and Evolutionary Conservation

    Authors: Kotler E., Shani O., Goldfeld G., Lotan-Pompan M., Tarcic O., Gershoni A., Hopf T. A., Marks D. S., Oren M. & Segal E. (2018), Molecular Cell. 71, 1, p. 178-190.e8
  • Functional characterization of the p53 "mutome"

    Authors: Kotler E., Segal E. & Oren M. (2018), Molecular & cellular oncology. 5, 6, 1511207
  • Caspases maintain tissue integrity by an apoptosis-independent inhibition of cell migration and invasion

    Authors: Gorelick-Ashkenazi A., Weiss R., Sapozhnikov L., Florentin A., Tarayrah-Ibraheim L., Dweik D., Yacobi-Sharon K. & Arama E. (2018), Nature Communications. 9, 1, 2806
  • Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018

    Authors: Galluzzi L., Vitale I., Aaronson S. A., Abrams J. M., Adam D., Agostinis P., Alnemri E. S., Altucci L., Amelio I., Andrews D. W., Annicchiarico-Petruzzelli M., Antonov A. V., Arama E., Baehrecke E. H., Barlev N. A., Bazan N. G., Bernassola F., Bertrand M. J. M., Bianchi K., Blagosklonny M. V., Blomgren K., Borner C., Boya P., Brenner C., Campanella M., Candi E., Carmona-Gutierrez D., Cecconi F., Chan F. K. -., Chandel N. S., Cheng E. H., Chipuk J. E., Cidlowski J. A., Ciechanover A., Cohen G. M., Conrad M., Cubillos-Ruiz J. R., Czabotar P. E., D'Angiolella V., Dawson T. M., Dawson V. L., De laurenzi V., De Maria R., Debatin K., DeBerardinis R. J., Deshmukh M., Gross A., Kimchi A., Oren M. & Wallach D. (2018), Cell Death and Differentiation. 25, 3, p. 486-541
  • Systems protobiology: origin of life in lipid catalytic networks

    Authors: Lancet D., Zidovetzki R. & Markovitch O. (2018), Journal of the Royal Society Interface. 15, 144, 20180159
  • Unraveling the determinants of microRNA mediated regulation using a massively parallel reporter assay

    Authors: Slutskin I. V., Weingarten-Gabbay S., Nir R., Weinberger A. & Segal E. (2018), Nature Communications. 9, 529
  • GeneHancer: Genome-wide integration of enhancers and target genes in GeneCards

    Authors: Fishilevich S., Nudel R., Rappaport N., Hadar R., Plaschkes I., Stein T. I., Rosen N., Kohn A., Twik M., Safran M., Lancet D. & Cohen D. (2017), Database-The Journal Of Biological Databases And Curation. 2017, bax028
  • CDPs: caspase-dependent non-lethal cellular processes

    Authors: Aram L., Yacobi-Sharon K. & Arama E. (2017), Cell Death and Differentiation. 24, 8, p. 1307-1310
  • Controlling caspase activity in life and death

    Authors: White K., Arama E. & Hardwick J. M. (2017), PLoS Genetics. 13, 2, 1006545
  • Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

    Authors: Van Dijk D. D., Sharon E., Lotan-Pompan M., Weinberger A., Segal E. & Carey L. (2017), Genome Research. 27, 1, p. 87-94
  • MalaCards: an amalgamated human disease compendium with diverse clinical and genetic annotation and structured search

    Authors: Rappaport N., Twik M., Plaschkes I., Nudel R., Stein T. I., Levitt J., Gershoni M., Morrey C. P., Safran M. & Lancet D. (2017), Nucleic Acids Research. 45, D1, p. D877-D887
  • The landscape of sex-differential transcriptome and its consequent selection in human adults

    Authors: Gershoni M. & Pietrokovski S. (2017), BMC Biology. 15, 1, 7
  • p53-dependent programmed necrosis controls germ cell homeostasis during spermatogenesis

    Authors: Napoletano F., Gibert B., Yacobi-Sharon K., Vincent S., Favrot C., Mehlen P., Girard V., Teil M., Chatelain G., Walter L., Arama E. & Mollereau B. (2017), PLoS Genetics. 13, 9, e1007024
  • Identification and Characterization of Differentially-Regulated Type IVb Pilin Genes Necessary for Predation in Obligate Bacterial Predators /631/326/1320 /631/326/325 /38 article

    Authors: Avidan O., Petrenko M., Becker R., Beck S., Linscheid M., Pietrokovski S. & Jurkevitch E. (2017), Scientific Reports. 7, 1, 1013
  • Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

    Authors: Gritsenko A. A., Weingarten-Gabbay S., Elias-Kirma S., Nir R., De Ridder R. D. & Segal E. (2017), PLoS Computational Biology. 13, 9, e1005734
  • Involvement of a gut-retina axis in protection against dietary glycemia-induced age-related macular degeneration

    Authors: Rowan S., Jiang S., Korem T., Szymanski J., Chang M., Szelog J., Cassalman C., Dasuri K., McGuire C., Nagai R., Du X., Brownlee M., Rabbani N., Thornalley P. J., Baleja J. D., Deik A. A., Pierce K. A., Scott J. M., Clish C. B., Smith D. E., Weinberger A., Avnit Sagi T., Lotan-Pompan M., Segal E. & Taylor A. (2017), Proceedings of the National Academy of Sciences of the United States of America. 114, 22, p. E4472-E4481
  • Development of a screening system for inteins active in protein splicing based on intein insertion into the LacZ alpha-peptide

    Authors: Neugebauer M., Bocker J., Matern J., Pietrokovski S. & Mootz H. (2017), Biological Chemistry. 398, 1, p. 57-67
  • A familial study of azoospermic men identifies three novel causative mutations in three new human azoospermia genes

    Authors: Gershoni M., Hauser R., Yogev L., Lehavi O., Azem F., Yavetz H., Pietrokovski S. & Kleiman S. E. (2017), Genetics in Medicine. 19, 9, p. 998-1006
  • Systematic Investigation of Transcription Factor Activity in the Context of Chromatin Using Massively Parallel Binding and Expression Assays

    Authors: Levo M., Avnit-Sagi T., Lotan-Pompan M., Kalma Y., Weinberger A., Yakhini Z. & Segal E. (2017), Molecular Cell. 65, 4, p. 604-+
  • Rational confederation of genes and diseases: NGS interpretation via GeneCards, MalaCards and VarElect

    Authors: Rappaport N., Fishilevich S., Nudel R., Twik M., Belinky F., Plaschkes I., Stein T. I., Cohen D., Oz Levi L. D., Safran M. & Lancet D. (2017), BioMedical Engineering Online. 16, 72
  • Next-generation sequencing of patients with congenital anosmia

    Authors: Alkelai A., Olender T., Dode C., Shushan S., Tatarskyy P., Furman-Haran E., Boyko V., Gross-Isseroff R., Halvorsen M., Greenbaum L., Milgrom R., Yamada K., Haneishi A., Blau I. & Lancet D. (2017), European Journal of Human Genetics. 25, 12, p. 1377-1387
  • TECPR2 mutations cause a new subtype of familial dysautonomia like hereditary sensory autonomic neuropathy with intellectual disability

    Authors: Heimer G., Oz-Levi D., Eyal E., Edvardson S., Nissenkorn A., Ruzzo E. K., Szeinberg A., Maayan C., Mai-Zahav M., Efrati O., Pras E., Reznik-Wolf H., Lancet D., Goldstein D. B., Anikster Y., Shalev S. A., Elpeleg O. & Ben Zeev B. (2016), European Journal of Paediatric Neurology. 20, 1, p. 69-79
  • A role for TENM1 mutations in congenital general anosmia

    Authors: Alkelai A., Olender T., Haffner-Krausz R., Tsoory M. M., Boyko V., Tatarskyy P., Gross-Isseroff R., Milgrom R., Shushan S., Blau I., Cohn E., Beeri R., Levy-Lahad E., Pras E. & Lancet D. (2016), Clinical Genetics. 90, 3, p. 211-219
  • GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data

    Authors: Ben-Ari Fuchs S., Lieder I., Stelzer G., Mazor Y., Buzhor E., Kaplan S., Bogoch Y., Plaschkes I., Shitrit A., Rappaport N., Kohn A., Edgar R., Shenhav L., Safran M., Lancet D., Guan-Golan Y., Warshawsky D. & Shtrichman R. (2016), OMICS A Journal of Integrative Biology. 20, 3, p. 139-151
  • The GeneCards suite: From gene data mining to disease genome sequence analyses

    Authors: Stelzer G., Rosen N., Plaschkes I., Zimmerman S., Twik M., Fishilevich S., Stein T. I., Nudel R., Lieder I., Mazor Y., Kaplan S., Dahary D., Warshawsky D., Guan-Golan Y., Kohn A., Rappaport N., Safran M. & Lancet D. (2016), Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]. 2016, p. 1.30.1-1.30.33
  • A Krebs Cycle Component Limits Caspase Activation Rate through Mitochondrial Surface Restriction of CRL Activation

    Authors: Aram L., Braun T., Braverman C., Kaplan Y., Ravid L., Levin-Zaidman S. & Arama E. (2016), Developmental Cell. 37, 1, p. 15-33
  • Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

    Authors: Klionsky D. J., Abdelmohsen K., Abe A., Abedin M. J., Abeliovich H., Arozena A. A., Adachi H., Adams C. M., Adams P. D., Adeli K., Adhihetty P. J., Adler S. G., Agam G., Agarwal R., Aghi M. K., Agnello M., Agostinis P., Aguilar P. V., Aguirre-Ghiso J., Airoldi E. M., Ait-Si-Ali S., Akematsu T., Akporiaye E. T., Al-Rubeai M., Albaiceta G. M., Albanese C., Albani D., Albert M. L., Aldudo J., Alguel H., Alirezaei M., Alloza I., Almasan A., Almonte-Beceril M., Alnemri E. S., Alonso C., Altan-Bonnet N., Altieri D. C., Alvarez S., Alvarez-Erviti L., Alves S., Arama E., Eisenberg-Lerner A., Elazar Z., Galili G. & Kimchi A. (2016), Autophagy. 12, 1, p. 1-222
  • Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations

    Authors: Thaiss C., Levy M., Korem T., Dohnalova L., Shapiro H., Jaitin D., David E., Winter D., Gury-BenAri M., Tatirovsky E., Tuganbaev T., Federici S., Zmora N., Zeevi D., Dori-Bachash M., Pevsner-Fischer M., Kartvelishvily E., Brandis A., Harmelin A., Shibolet O., Halpern Z., Honda K., Amit I., Segal E. & Elinav E. (2016), Cell. 167, 6, p. 1495-1510.e12
  • The unconventional myosin CRINKLED and its mammalian orthologue MYO7A regulate caspases in their signalling roles

    Authors: Orme M. H., Liccardi G., Moderau N., Feltham R., Wicky-John S., Tenev T., Aram L., Wilson R., Bianchi K., Morris O., Domingues C. M., Robertson D., Tare M., Wepf A., Williams D., Bergmann A., Gstaiger M., Arama E., Ribeiro P. S. & Meier P. (2016), Nature Communications. 7, 10972
  • Identification of a Functional Risk Variant for Pemphigus Vulgaris in the ST18 Gene

    Authors: Vodo D., Sarig O., Geller S., Ben-Asher E., Olender T., Bochner R., Goldberg I., Nosgorodsky J., Alkelai A., Tatarskyy P., Peled A., Baum S., Barzilai A., Ibrahim S. M., Zillikens D., Lancet D. & Sprecher E. (2016), PLoS Genetics. 12, 5, e1006008
  • The de-ubiquitylating enzyme DUBA is essential for spermatogenesis in Drosophila

    Authors: Koerver L., Melzer J., Roca E. A., Teichert D., Glatter T., Arama E. & Broemer M. (2016), Cell Death Differ. 23, 12, p. 2019-2030
  • VarElect: The phenotype-based variation prioritizer of the GeneCards Suite

    Authors: Stelzer G., Plaschkes I., Oz Levi L. D., Alkelai A., Olender T., Zimmerman S., Twik M., Belinky F., Fishilevich S., Nudel R., Guan-Golan Y., Warshawsky D., Dahary D., Kohn A., Mazor Y., Kaplan S., Stein T. I., Baris H. N., Rappaport N., Safran M. & Lancet D. (2016), BMC Genomics. 17, 444
  • Genic insights from integrated human proteomics in GeneCards.

    Authors: Fishilevich S., Zimmerman S., Kohn A., Iny Stein S. T., Olender T., Kolker E., Safran M. & Lancet D. (2016), Database : the journal of biological databases and curation. 2016, 27048349
  • An extended cyclic di-GMP network in the predatory bacterium Bdellovibrio bacteriovorus

    Authors: Rotem O., Nesper J., Borovok I., Gorovits R., Kolot M., Pasternak Z., Shin I., Glatter T., Pietrokovski S., Jenal U. & Jurkevitch E. (2016), Journal of Bacteriology. 198, 1, p. 127-137
  • The human olfactory transcriptome

    Authors: Olender T., Keydar I., Pinto J. M., Tatarskyy P., Alkelai A., Chien M., Fishilevich S., Restrepo D., Matsunami H., Gilad Y. & Lancet D. (2016), BMC Genomics. 17, 1, 619
  • ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions

    Authors: Marenco L., Wang R., McDougal R., Olender T., Twik M., Bruford E., Liu X., Zhang J., Lancet D., Shepherd G. & Crasto C. (2016), Database-The Journal Of Biological Databases And Curation. 2016, baw132
  • Cancer therapeutic approach based on conformational stabilization of mutant p53 protein by small peptides

    Authors: Tal P., Eizenberger S., Cohen E., Goldfinger N., Pietrokovski S., Oren M. & Rotter V. (2016), Oncotarget. 7, 11, p. 11817-11837
  • A minimalistic resource allocation model to explain ubiquitous increase in protein expression with growth rate

    Authors: Barenholz U., Keren L., Segal E. & Milo R. (2016), PLoS ONE. 11, 4, 0153344
  • Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness

    Authors: Keren L., Hausser J., Lotan-Pompan M., Vainberg Slutskin I., Alisar H., Kaminski S., Weinberger A., Alon U., Milo R. & Segal E. (2016), Cell. 166, 5, p. 1282-1294.e18
  • Comparative genetics: Systematic discovery of cap-independent translation sequences in human and viral genomes

    Authors: Weingarten-Gabbay S., Elias-Kirma S., Nir R., Gritsenko A. A., Stern-Ginossar N., Yakhini Z., Weinberger A. & Segal E. (2016), Science. 351, 6270, aad4939
  • Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples

    Authors: Korem T., Zeevi D., Suez J., Weinberger A., Avnit Sagi S. T., Pompan-Lotan M., Matot E., Jona G., Harmelin A., Cohen N., Sirota-Madi A., Thaiss C. A., Pevsner-Fischer M., Sorek R., Xavier R. J., Elinav E. & Segal E. (2015), Science (New York, N.Y.). 349, 6252, p. 1101-1106
  • Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling

    Authors: Levy M., Thaiss C. A., Zeevi D., Dohnalova L., Zilberman-Schapira G., Mahdi J. A., David E., Savidor A., Korem T., Herzig Y., Pevsner-Fischer M., Shapiro H., Christ A., Harmelin A., Halpern Z., Latz E., Flavell R. A., Amit I., Segal E. & Elinav E. (2015), Cell. 163, 6, p. 1428-1443
  • Exome sequencing as a differential diagnosis tool: Resolving mild trichohepatoenteric syndrome

    Authors: Oz Levi L. D., Weiss B., Lahad A., Greenberger S., Pode-Shakked B., Somech R., Olender T., Tatarsky P., Marek-Yagel D., Pras E., Anikster Y. & Lancet D. (2015),
  • Noise in gene expression is coupled to growth rate

    Authors: Keren L., Van Dijk D. D., Weingarten-Gabbay S., Davidi D., Jona G., Weinberger A., Milo R. & Segal E. (2015), Genome Research. 25, p. 1893-1902
  • Cell-cycle progress in obligate predatory bacteria is dependent upon sequential sensing of prey recognition and prey quality cues

    Authors: Rotem O., Pasternak Z., Shimoni E., Belausov E., Porat Z., Pietrokovski S. & Jurkevitch E. (2015), Proceedings of the National Academy of Sciences of the United States of America. 112, 44, p. E6028-E6037
  • Personalized Nutrition by Prediction of Glycemic Responses

    Authors: Zeevi D., Korem T., Zmora N., Israeli D., Rothschild D., Weinberger A., Ben-Yacov O., Lador D., Avnit Sagi S. T., Lotan-Pompan M., Suez J., Mahdi J. A., Matot E., Malka G., Kosower N., Rein M., Zilberman-Schapira G., Dohnalova L., Pevsner-Fischer M., Bikovsky R., Halpern Z., Elinav E. & Segal E. (2015), Cell. 163, 5, p. 1079-1094
  • Systematic Dissection of the Sequence Determinants of Gene 3’ End Mediated Expression Control

    Authors: Shalem O., Sharon E., Lubliner S., Regev I., Lotan-Pompan M., Yakhini Z. & Segal E. (2015), PLoS Genetics. 11, 4, e1005147
  • Absence of α-and β-dystroglycan is associated with Walker-Warburg syndrome

    Authors: Riemersma M., Mandel H., Van Beusekom E., Gazzoli I., Roscioli T., Eran A., Gershoni-Baruch R., Gershoni M., Pietrokovski S., Vissers L. E., Lefeber D. J., Willemsen M. A., Wevers R. A. & Van Bokhoven H. (2015), Neurology. 84, 21, p. 2177-2182
  • GenoExp: A web tool for predicting gene expression levels from single nucleotide polymorphisms

    Authors: Manor O. & Segal E. (2015), Bioinformatics. 31, 11, p. 1848-1850
  • Editorial overview: Genome architecture and expression

    Authors: Panning B. & Segal E. (2015), Current opinion in genetics & development. 31, p. v-vi
  • Artificial Sweeteners Induce Glucose Intolerance by Altering the Gut Microbiota: Editorial comment

    Authors: Suez J., Korem T., Zeevi D., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E. & Elinav E. (2015),
  • Artificial sweeteners induce glucose intolerance by altering the gut microbiota

    Authors: Suez J., Korem T., Zeevi D., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E. & Elinav E. (2014), Nature. 514, 7521, p. 181-186
  • A shared architecture for promoters and enhancers

    Authors: Weingarten-Gabbay S. & Segal E. (2014),
  • MOPED enables discoveries through consistently processed proteomics data

    Authors: Higdon R., Stewart E., Stanberry L., Haynes W., Choiniere J., Montague E., Anderson N., Yandl G., Janko I., Broomall W., Fishilevich S., Lancet D., Kolker N. & Kolker E. (2014), Journal of Proteome Research. 13, 1, p. 107-113
  • In pursuit of design principles of regulatory sequences

    Authors: Levo M. & Segal E. (2014), Nature Reviews Genetics. 15, 7, p. 453-468
  • Host-parasite network structure is associated with community-level immunogenetic diversity

    Authors: Pilosof S., Fortuna M. A., Cosson J. F., Galan M., Kittipong C., Ribas A., Segal E., Krasnov B. R., Morand S. & Bascompte J. (2014), Nature Communications. 5, 5172
  • Paternal mitochondrial destruction after fertilization is mediated by a common endocytic and autophagic pathway in drosophila

    Authors: Politi Y., Gal L., Kalifa Y., Ravid L., Elazar Z. & Arama E. (2014), Developmental Cell. 29, 3, p. 305-320
  • Probing the effect of promoters on noise in gene expression using thousands of designed sequences

    Authors: Sharon E., Van Dijk D. D., Kalma Y., Keren L., Manor O., Yakhini Z. & Segal E. (2014), Genome Research. 24, 10, p. 1698-1706
  • The grammar of transcriptional regulation

    Authors: Weingarten-Gabbay S. & Segal E. (2014), Human Genetics. 133, 6, p. 701-711
  • Reduced selection and accumulation of deleterious mutations in genes exclusively expressed in men

    Authors: Gershoni M. & Pietrokovski S. (2014), Nature Communications. 5, 4438
  • An atypical naturally split intein engineered for highly efficient protein labeling

    Authors: Thiel I. V., Volkmann G., Pietrokovski S. & Mootz H. D. (2014), ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 53, 5, p. 1306-1310
  • Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis

    Authors: Thaiss C. A., Zeevi D., Levy M., Zilberman-Schapira G., Suez J., Tengeler A. C., Abramson L., Katz M. N., Korem T., Zmora N., Kuperman Y., Biton I., Gilad S., Harmelin A., Shapiro H., Halpern Z., Segal E. & Elinav E. (2014), Cell. 159, 3, p. 514-529
  • Multispecies population dynamics of prebiotic compositional assemblies

    Authors: Markovitch O. & Lancet D. (2014), Journal of Theoretical Biology. 357, p. 26-34
  • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters

    Authors: Zeevi D., Lubliner S., Lotan-Pompan M., Hodis E., Vesterman R., Weinberger A. & Segal E. (2014), Genome Research. 24, 12, p. 1991-1999
  • In and out: an analysis of epibiotic vs periplasmic bacterial predators

    Authors: Pasternak Z., Njagi M., Shani Y., Chanyi R., Rotem O., Lurie-Weinberger M. N., Koval S., Pietrokovski S., Gophna U. & Jurkevitch E. (2014), ISME Journal. 8, 3, p. 625-635
  • Landscape and variation of RNA secondary structure across the human transcriptome

    Authors: Wan Y., Qu K., Zhang Q. C., Flynn R. A., Manor O., Ouyang Z., Zhang J., Spitale R. C., Snyder M. P., Segal E. & Chang H. Y. (2014), Nature. 505, 7485, p. 706-709
  • Alternative germ cell death pathway in drosophila involves HtrA2/Omi, lysosomes, and a caspase-9 counterpart

    Authors: Yacobi-Sharon K., Namdar Y. & Arama E. (2013), Developmental Cell. 25, 1, p. 29-42
  • Determinants of nucleosome positioning

    Authors: Struhl K. & Segal E. (2013), Nature Structural & Molecular Biology. 20, 3, p. 267-273
  • Non-redundant compendium of human ncRNA genes in GeneCards

    Authors: Belinky F., Bahir I., Stelzer G., Zimmerman S., Rosen N., Nativ N., Dalah I., Stein T. I., Rappaport N., Mituyama T., Safran M. & Lancet D. (2013), Bioinformatics. 29, 2, p. 255-261
  • An overview of synergistic data tools for biological scrutiny

    Authors: Olender T., Safran M., Edgar R., Stelzer G., Nativ N., Rosen N., Shtrichman R., Mazor Y., West M. D., Keydar I., Rappaport N., Belinky F., Warshawsky D. & Lancet D. (2013), Israel Journal of Chemistry. 53, 3-4, p. 185-198
  • General Olfactory Sensitivity Database (GOSdb): Candidate Genes and their Genomic Variations

    Authors: Keydar I., Ben-Asher E., Feldmesser E., Nativ N., Oshimoto A., Restrepo D., Matsunami H., Chien M., Pinto J. M., Gilad Y., Olender T. & Lancet D. (2013), Human Mutation. 34, 1, p. 32-41
  • TECPR2:A new autophagy link for neurodegeneration

    Authors: Oz-Levi D., Gelman A., Elazar Z. & Lancet D. (2013), Autophagy. 9, 5, p. 801-802
  • Promoter Sequence Determines the Relationship between Expression Level and Noise

    Authors: Carey L. B., van Dijk D., Sloot P. M., Kaandorp J. A. & Segal E. (2013), PLoS Biology. 11, 4, e1001528
  • Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise

    Authors: Dadiani M., Van Dijk D. D., Segal B., Field Y., Ben Artzi A. G., Raveh - Sadka -. S. T., Levo M., Kaplow I., Weinberger A. & Segal E. (2013), Genome Research. 23, 6, p. 966-976
  • The MATCHIT automaton: Exploiting compartmentalization for the synthesis of branched polymers

    Authors: Weyland M. S., Fellermann H., Hadorn M., Sorek D., Lancet D., Rasmussen S. & Fuechslin R. M. (2013), Computational and Mathematical Methods in Medicine. 2013, 467428
  • Measurements of the Impact of 3′ End Sequences on Gene Expression Reveal Wide Range and Sequence Dependent Effects

    Authors: Shalem O., Carey L., Zeevi D., Sharon E., Keren L., Weinberger A., Dahan O., Pilpel Y. & Segal E. (2013), PLoS Computational Biology. 9, 3, e1002934
  • Promoters maintain their relative activity levels under different growth conditions

    Authors: Keren L., Zackay O., Lotan-Pompan M., Barenholz U., Dekel E., Sasson V., Aidelberg G., Bren A., Zeevi D., Weinberger A., Alon U., Milo R. & Segal E. (2013), Molecular Systems Biology. 9, 701
  • Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein

    Authors: Zalckvar E., Paulus C., Tillo D., Asbach-Nitzsche A., Lubling Y., Winterling C., Strieder N., Mücke K., Goodrum F., Segal E. & Nevels M. (2013), Proceedings of the National Academy of Sciences of the United States of America. 110, 32, p. 13126-13131
  • MalaCards: An integrated compendium for diseases and their annotation

    Authors: Rappaport N., Nativ N., Stelzer G., Twik M., Guan-Golan Y., Stein T. I., Bahir I., Belinky F., Morrey C. P., Safran M. & Lancet D. (2013), Database-The Journal Of Biological Databases And Curation. 2013, bat018
  • Deficiency of Asparagine Synthetase Causes Congenital Microcephaly and a Progressive Form of Encephalopathy

    Authors: Ruzzo E. K., Oz Levi D., Ben-Asher E., Olender T. & Lancet D. (2013), Neuron. 80, 2, p. 429-441
  • Robust Prediction of Expression Differences among Human Individuals Using Only Genotype Information

    Authors: Manor O. & Segal E. (2013), PLoS Genetics. 9, 3, e1003396
  • Predicting Disease Risk Using Bootstrap Ranking and Classification Algorithms

    Authors: Manor O. & Segal E. (2013), PLoS Computational Biology. 9, 8, e1003200
  • Deciphering the rules by which 5'-UTR sequences affect protein expression in yeast

    Authors: Dvir S., Velten L., Sharon E., Zeevi D., Carey L. B., Weinberger A. & Segal E. (2013), Proceedings of the National Academy of Sciences of the United States of America. 110, 30, p. E2792-E2801
  • Fixated on fixation - using ChIP to interrogate the dynamics of chromatin interactions

    Authors: Keren L. & Segal E. (2013), GENOME BIOLOGY. 14, 11, 138
  • Oriented covalent immobilization of antibodies for measurement of intermolecular binding forces between zipper-like contact surfaces of split inteins

    Authors: Sorci M., Dassa B., Liu H., Anand G., Dutta A. K., Pietrokovski S., Belfort M. & Belfort G. (2013), Analytical Chemistry. 85, 12, p. 6080-6088
  • Sequence features of yeast and human core promoters that are predictive of maximal promoter activity

    Authors: Lubliner S., Keren L. & Segal E. (2013), Nucleic Acids Research. 41, 11, p. 5569-5581
  • By their genes ye shall know them: Genomic signatures of predatory bacteria

    Authors: Pasternak Z., Pietrokovski S., Rotem O., Gophna U., Lurie-Weinberger M. N. & Jurkevitch E. (2013), ISME Journal. 7, 4, p. 756-769
  • Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

    Authors: Meyer P., Siwo G., Zeevi D., Sharon E., Norel R., Segal E., Stolovitzky G., Rider A. K., Tan A., Pinapati R. S., Emrich S., Chawla N., Ferdig M. T., Tung Y. A., Chen Y. S., Chen M. J. M., Chen C. Y., Knight J. M., Sahraeian S. M. E. & Esfahani M. S. (2013), Genome Research. 23, 11, p. 1928-1937
  • Mutation in TECPR2 reveals a role for autophagy in hereditary spastic paraparesis

    Authors: Oz Levi D., Ben-Zeev B., Ruzzo E. K., Hitomi Y., Gelman A., Pelak K., Anikster Y., Reznik-Wolf H., Bar-Joseph I., Olender T., Alkelai A., Weiss M., Ben-Asher E., Ge D., Shianna K. V., Elazar Z., Goldstein D. B., Pras E. & Lancet D. (2012), American Journal of Human Genetics. 91, 6, p. 1065-1072
  • Is There an Optimal Level of Open-Endedness in Prebiotic Evolution?

    Authors: Markovitch O., Sorek D., Lui L. T., Lancet D. & Krasnogor N. (2012), Origins of Life and Evolution of Biospheres. 42, 5, p. 469-474
  • New insights into replication origin characteristics in metazoans

    Authors: Cayrou C., Coulombe P., Puy A., Rialle S., Kaplan N., Segal E. & Mechali M. (2012), Cell Cycle. 11, 4, p. 658-667
  • Sporoptosis: Sowing the Seeds of Nuclear Destruction

    Authors: Aram L. & Arama E. (2012),
  • Association of the type 2 diabetes mellitus susceptibility gene, TCF7L2, with schizophrenia in an Arab-Israeli family sample

    Authors: Alkelai A., Greenbaum L., Lupoli S., Kohn Y., Sarner-Kanyas K., Ben-Asher E., Lancet D., Macciardi F. & Lerer B. (2012), PLoS ONE. 7, 1, e29228
  • From catalogue to function

    Authors: Segal E. (2012), Nature. 489, 7414, p. 55-55
  • Personal receptor repertoires: olfaction as a model

    Authors: Olender T., Waszak S. M., Viavant M., Khen M., Ben-Asher E., Reyes A., Nativ N., Wysocki C. J., Ge D. & Lancet D. (2012), BMC Genomics. 13, 1, 414
  • Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

    Authors: Sharon E., Kalma Y., Sharp A., Raveh - Sadka -. S. T., Levo M., Zeevi D., Keren L., Yakhini Z., Weinberger A. & Segal E. (2012), Nature Biotechnology. 30, 6, p. 521-+
  • Cell lineage analysis of the mammalian female germline

    Authors: Reizel Y., Itzkovitz S., Adar R., Elbaz J., Jinich A., Chapal Ilani I. N., Maruvka Y. E., Nevo N., Marx Z., Horovitz I., Wasserstrom A., Mayo A., Shur I., Benayahu D., Skorecki K., Segal E., Dekel N. & Shapiro E. (2012), PLoS Genetics. 8, 2, e1002477
  • Genome-wide Measurement of RNA Folding Energies

    Authors: Wan Y., Qu K., Ouyang Z., Kertesz M., Li J., Tibshirani R., Makino D. L., Nutter R. C., Segal E. & Chang H. Y. (2012), Molecular Cell. 48, 2, p. 169-181
  • DOCK4 and CEACAM21 as novel schizophrenia candidate genes in the Jewish population

    Authors: Alkelai A., Lupoli S., Greenbaum L., Kohn Y., Kanyas-Sarner K., Ben-Asher E., Lancet D., Macciardi F. & Lerer B. (2012), International Journal of Neuropsychopharmacology. 15, 4, p. 459-469
  • Genome sequence of the pattern-forming social bacterium: Paenibacillus dendritiformis C454 Chiral Morphotype

    Authors: Sirota-Madi A., Olender T., Helman Y., Brainis I., Finkelshtein A., Roth D., Hagai E., Leshkowitz D., Brodsky L., Galatenko V., Nikolaev V., Gutnick D. L., Lancet D. & Ben-Jacob E. (2012),
  • Caspase levels and execution efficiencies determine the apoptotic potential of the cell

    Authors: Florentin A. & Arama E. (2012), Journal of Cell Biology. 196, 4, p. 513-527
  • MOPED: Model Organism Protein Expression Database

    Authors: Kolker E., Higdon R., Haynes W., Welch D., Broomall W., Lancet D., Stanberry L. & Kolker N. (2012), Nucleic Acids Research. 40, D1, p. D1093-D1099
  • Evolutionary grass roots for odor recognition

    Authors: Olender T. & Lancet D. (2012),
  • Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast

    Authors: Raveh - Sadka -. S. T., Levo M., Shabi U., Shany B., Keren L., Lotan-Pompan M., Zeevi D., Sharon E., Weinberger A. & Segal E. (2012), Nature Genetics. 44, 7, p. 743-750
  • Excess Mutual Catalysis Is Required for Effective Evolvability

    Authors: Markovitch O. & Lancet D. (2012), Artificial Life. 18, 3, p. 243-266
  • The NAB-Brk signal bifurcates at JNK to independently induce apoptosis and compensatory proliferation

    Authors: Suissa Y., Ziv O., Dinur T., Arama E. & Gerlitz O. (2011), Journal of Biological Chemistry. 286, 17, p. 15556-15564
  • There Is More to Life than Death: A Moonlighting Function of a Bcl-2 Member

    Authors: Ravid L. & Arama E. (2011),
  • High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans

    Authors: Ercan S., Lubling Y., Segal E. & Lieb J. D. (2011), Genome Research. 21, 2, p. 237-244
  • New modularity of DAP-kinases: Alternative splicing of the DRP-1 gene produces a Zipk-like isoform

    Authors: Shoval Y., Berissi H., Kimchi A. & Pietrokovski S. (2011), PLoS ONE. 6, 3, e17344
  • Replication of simulated prebiotic amphiphile vesicles controlled by experimental lipid physicochemical properties

    Authors: Armstrong D. L., Markovitch O., Zidovetzki R. & Lancet D. (2011), Physical Biology. 8, 6, 066001
  • Computational Prediction of RNA Structural Motifs Involved in Post-Transcriptional Regulatory Processes

    Authors: Rabani M., Kertesz M. & Segal E. (2011), Rna Detection And Visualization. p. 467-479
  • Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters

    Authors: Zeevi D., Sharon E., Lotan-Pompan M., Lubling Y., Shipony Z., Raveh - Sadka -. S. T., Keren L., Levo M., Weinberger A. & Segal E. (2011), Genome Research. 21, 12, p. 2114-2128
  • Mapping of molecular pathways, biomarkers and drug targets for diabetic nephropathy

    Authors: Fechete R., Heinzel A., Perco P., Mönks K., Söllner J., Stelzer G., Eder S., Lancet D., Oberbauer R., Mayer G. & Mayer B. (2011), Proteomics Clinical Applications. 5, 5-6, p. 354-366
  • Synthetic lethal hubs associated with vincristine resistant neuroblastoma

    Authors: Fechete R., Barth S., Olender T., Munteanu A., Bernthaler A., Inger A., Perco P., Lukas A., Lancet D., Cinatl, Jr. J., Michaelis M. & Mayer B. (2011), Molecular BioSystems. 7, 1, p. 200-214
  • Myosin drives autophagy in a pathway linking Atg1 to Atg9

    Authors: Bialik S., Pietrokovski S. & Kimchi A. (2011), EMBO Journal. 30, 4, p. 629-630
  • Understanding the transcriptome through RNA structure

    Authors: Wan Y., Kertesz M., Spitale R. C., Segal E. & Chang H. Y. (2011), Nature Reviews Genetics. 12, 9, p. 641-655
  • Activity, specificity and structure of I-Bth0305I: A representative of a new homing endonuclease family

    Authors: Taylor G. K., Heiter D. F., Pietrokovski S. & Stoddard B. L. (2011), Nucleic Acids Research. 39, 22, p. 9705-9719
  • Identification of plant RAD52 homologs and characterization of the arabidopsis thaliana RAD52-like genes

    Authors: Samach A., Melamed-Bessudo C., Avivi-Ragolski N., Pietrokovski S. & Levy A. (2011), Plant Cell. 23, 12, p. 4266-4279
  • Atg8: An autophagy-related ubiquitin-like protein family

    Authors: Shpilka T., Weidberg H., Pietrokovski S. & Elazar Z. (2011), GENOME BIOLOGY. 12, 7, 226
  • Distinct molecular regulation of glycogen synthase kinase-3α isozyme controlled by its N-terminal region functional role in CALCIUM/CALPAIN signaling

    Authors: Azoulay-Alfaguter I., Yaffe Y., Licht-Murava A., Urbanska M., Jaworsk J., Pietrokovski S., Hirschberg K. & Eldar-Finkelman H. (2011), Journal of Biological Chemistry. 286, 15, p. 13470-13480
  • Selective loss of glycogen synthase kinase-3α in birds reveals distinct roles for GSK-3 isozymes in tau phosphorylation

    Authors: Alon L. T., Pietrokovski S., Barkan S., Avrahami L., Kaidanovich-Beilin O., Woodgett J. R., Barnea A. & Eldar-Finkelman H. (2011), FEBS Letters. 585, 8, p. 1158-1162
  • Omics Data Management and Annotation

    Authors: Harel A., Dalah I., Pietrokovski S., Safran M. & Lancet D. (2011), Bioinformatics For Omics Data. p. 71-96
  • How Transcription Factors Identify Regulatory Sites in Genomic Sequence

  • Identification of new schizophrenia susceptibility loci in an ethnically homogeneous, family-based, Arab-Israeli sample

    Authors: Alkelai A., Lupoli S., Greenbaum L., Giegling I., Kohn Y., Sarner-Kanyas K., Ben-Asher E., Lancet D., Rujescu D., Macciardi F. & Lerer B. (2011), FASEB Journal. 25, 11, p. 4011-4023
  • Axonal degeneration is regulated by the apoptotic machinery or a NAD +-sensitive pathway in insects and mammals

    Authors: Schoenmann Z., Assa Kunik K. E., Tiomny S., Minis A., Haklai-Topper L., Arama E. & Yaron A. (2010), Journal of Neuroscience. 30, 18, p. 6375-6386
  • Spontaneous chiral symmetry breaking in early molecular networks

    Authors: Kafri R., Markovitch O. & Lancet D. (2010), Biology Direct. 5, 38
  • Long noncoding RNA as modular scaffold of histone modification complexes

    Authors: Tsai M., Manor O., Wan Y., Mosammaparast N., Wang J. K., Lan F., Shi Y., Segal E. & Chang H. Y. (2010), Science. 329, 5992, p. 689-693
  • A novel F-box protein is required for caspase activation during cellular remodeling in Drosophila

    Authors: Bader M., Arama E. & Steller H. (2010), Development. 137, 10, p. 1679-1688
  • Substrate Competitive GSK-3 Inhibitors {single bond} strategy and Implications

    Authors: Eldar-Finkelman H., Licht-Murava A., Pietrokovski S. & Eisenstein M. (2010), Biochimica Et Biophysica Acta-Proteins And Proteomics. 1804, 3, p. 598-603
  • Gradients of a Ubiquitin E3 Ligase Inhibitor and a Caspase Inhibitor Determine Differentiation or Death in Spermatids

    Authors: Kaplan Y., Gibbs-Bar L., Kalifa Y., Feinstein-Rotkopf Y. & Arama E. (2010), Developmental Cell. 19, 1, p. 160-173
  • Lymphoblast and brain expression of AHI1 and the novel primate-specific gene, C6orf217, in schizophrenia and bipolar disorder

    Authors: Slonimsky A., Levy I., Kohn Y., Rigbi A., Ben-Asher E., Lancet D., Agam G. & Lerer B. (2010), Schizophrenia Research. 120, 3-Jan, p. 159-166
  • Nucleosome sequence preferences influence in vivo nucleosome organization

    Authors: Kaplan N., Moore I., Fondufe-Mittendorf Y., Gossett A. J., Tillo D., Field Y., Hughes T. R., Lieb J. D., Widom J. & Segal E. (2010),
  • Contribution of histone sequence preferences to nucleosome organization: Proposed definitions and methodology

    Authors: Kaplan N., Hughes T. R., Lieb J. D., Widom J. & Segal E. (2010), GENOME BIOLOGY. 11, 11, 140
  • Meig1 deficiency causes a severe defect in mouse spermatogenesis

    Authors: Salzberg Y., Eldar T., Karminsky O. D., Itach S. B. S., Pietrokovski S. & Don J. (2010), Developmental Biology. 338, 2, p. 158-167
  • Fine mapping of AHI1 as a schizophrenia susceptibility gene: From association to evolutionary evidence

    Authors: Torri F., Akelai A., Lupoli S., Sironi M., Amann Zalcenstein D., Fumagalli M., Dal Fiume C., Ben-Asher E., Kanyas K., Cagliani R., Cozzi P., Trombetti G., Lievers L. S., Salvi E., Orro A., Beckmann J. S., Lancet D., Kohn Y. & Milanesi L. (2010), FASEB Journal. 24, 8, p. 3066-3082
  • GeneCards Version 3: the human gene integrator.

    Authors: Safran M., Dalah I., Alexander J., Rosen N., Stein T. I., Shmoish M., Nativ N., Bahir I., Doniger T., Krug H., Sirota-Madi A., Olender T., Golan Y., Stelzer G., Harel A. & Lancet D. (2010), Database-The Journal Of Biological Databases And Curation. 2010, p. baq020
  • Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

    Authors: Gerstein M. B., Lu Z. J., Van Nostrand E. L., Cheng C., Arshinoff B. I., Liu T., Yip K. Y., Robilotto R., Rechtsteiner A., Ikegami K., Alves P., Chateigner A., Perry M., Morris M., Auerbach R. K., Feng X., Leng J., Vielle A., Niu W., Rhrissorrakrai K., Agarwal A., Alexander R. P., Barber G., Brdlik C. M., Brennan J., Brouillet J. J., Carr A., Cheung M. S., Clawson H., Contrino S., Dannenberg L. O., Dernburg A. F., Desai A., Dick L., Dosé A. C., Du J., Egelhofer T., Ercan S., Euskirchen G., Ewing B., Feingold E. A., Gassmann R., Good P. J., Green P., Gullier F., Gutwein M., Guyer M. S., Habegger L., Han T., Henikoff J. G., Henz S. R., Hinrichs A., Holster H., Hyman T., Iniguez A. L., Janette J., Jensen M., Kato M., Kent W. J., Kephart E., Khivansara V., Khurana E., Kim J. K., Kolasinska-Zwierz P., Lai E. C., Latorre I., Leahey A., Lewis S., Lloyd P., Lochovsky L., Lowdon R. F., Lubling Y., Lyne R., MacCoss M., Mackowiak S. D., Mangone M., McKay S., Mecenas D., Merrihew G., Miller D. M., Muroyama A., Murray J. I., Ooi S. L., Pham H., Phippen T., Preston E. A., Rajewsky N., Rätsch G., Rosenbaum H., Rozowsky J., Rutherford K., Ruzanov P., Sarov M., Sasidharan R., Sboner A., Scheid P., Segal E., Shin H., Shou C., Slack F. J., Slightam C., Smith R., Spencer W. C., Stinson E. O., Taing S., Takasaki T., Vafeados D., Voronina K., Wang G., Washington N. L., Whittle C. M., Wu B., Yan K. K., Zeller G., Zha Z., Zhong M., Zhou X., Ahringer J., Strome S., Gunsalus K. C., Micklem G., Liu X. S., Reinke V., Kim S. K., Hillier L. W., Henikoff S., Piano F., Snyder M., Stein L., Lieb J. D. & Waterston R. H. (2010), Science. 330, 6012, p. 1775-1787
  • Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

    Authors: Waszak S. M., Hasin Y., Zichner T., Olender T., Keydar I., Khen M., Stuetz A. M., Schlattl A., Lancet D. & Korbel J. O. (2010), PLoS Computational Biology. 6, 11, e1000988
  • Overlapping codes within protein-coding sequences

    Authors: Itzkovitz S., Hodis E. & Segal E. (2010), Genome Research. 20, 11, p. 1582-1589
  • Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments

    Authors: Sirota-Madi A., Olender T., Helman Y., Ingham C., Brainis I., Roth D., Hagi E., Brodsky L., Leshkowitz D., Galatenko V., Nikolaev V., Mugasimangalam R. C., Bransburg-Zabary S., Gutnick D. L., Lancet D. & Ben-Jacob E. (2010), BMC Genomics. 11, 1, 710
  • Mutation detection with next-generation resequencing through a mediator genome

    Authors: Wurtzel O., Dori-Bachash M., Pietrokovski S., Jurkevitch E. & Sorek R. (2010), PLoS ONE. 5, 12, e15628
  • p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy

    Authors: Nili E. L., Field Y., Lubling Y., Widom J., Oren M. & Segal E. (2010), Genome Research. 20, 10, p. 1361-1368
  • Genome-wide measurement of RNA secondary structure in yeast

    Authors: Kertesz M., Wan Y., Mazor E., Rinn J. L., Nutter R. C., Chang H. Y. & Segal E. (2010), Nature. 467, 7311, p. 103-107
  • Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast

    Authors: Kenigsberg E., Bar A., Segal E. & Tanay A. (2010), PLoS Computational Biology. 6, 12, e1001039
  • Splicing of the mycobacteriophage bethlehem DnaB intein: Identification of a new mechanistic class of inteins that contain an obligate block f nucleophile

    Authors: Tori K., Dassa B., Johnson M. A., Southworth M. W., Brace L. E., Ishino Y., Pietrokovski S. & Perler F. B. (2010), Journal of Biological Chemistry. 285, 4, p. 2515-2526
  • High nucleosome occupancy is encoded at human regulatory sequences

    Authors: Tillo D., Kaplan N., Moore I. K., Fondufe-Mittendorf Y., Gossett A. J., Field Y., Lieb J. D., Widom J., Segal E. & Hughes T. R. (2010), PLoS ONE. 5, 2, e9129
  • The DNA-encoded nucleosome organization of a eukaryotic genome

    Authors: Kaplan N., Moore I. K., Fondufe-Mittendorf Y., Gossett A. J., Tillo D., Field Y., LeProust E. M., Hughes T. R., Lieb J. D., Widom J. & Segal E. (2009), Nature. 458, 7236, p. 362-366
  • Proteome-wide prediction of acetylation substrates

    Authors: Basu A., Rose K. L., Zhang J., Beavis R. C., Ueberheide B., Garcia B. A., Chait B., Zhao Y., Hunt D. F., Segal E., Allis C. D. & Hake S. B. (2009), Proceedings of the National Academy of Sciences of the United States of America. 106, 33, p. 13785-13790
  • GeneDecks: Paralog hunting and gene-set distillation with genecards annotation

    Authors: Stelzer G., Inger A., Olender T., Iny Stein S. T., Dalah I., Harel A., Safran M. & Lancet D. (2009), Omics-A Journal Of Integrative Biology. 13, 6, p. 477-487
  • Drosophila Past1 is involved in endocytosis and is required for germline development and survival of the adult fly

    Authors: Olswang-Kutz Y., Gertel Y., Benjamin S., Sela O., Pekar O., Arama E., Steller H., Horowitz M. & Segal D. (2009), Journal of Cell Science. 122, 4, p. 471-480
  • Common peptides shed light on evolution of Olfactory Receptors

    Authors: Gottlieb A., Olender T., Lancet D. & Horn D. (2009), BMC Evolutionary Biology. 9, 1, 91
  • Fractured genes: A novel genomic arrangement involving new split inteins and a new homing endonuclease family

    Authors: Dassa B., London N., Stoddard B. L., Schueler-Furman O. & Pietrokovski S. (2009), Nucleic Acids Research. 37, 8, p. 2560-2573
  • Poly(dA:dT) tracts: major determinants of nucleosome organization

    Authors: Segal E. & Widom J. (2009), Current Opinion in Structural Biology. 19, 1, p. 65-71
  • GIFtS: Annotation landscape analysis with GeneCards

    Authors: Harel A., Inger A., Stelzer G., Strichman-Almashanu L., Dalah I., Safran M. & Lancet D. (2009), BMC Bioinformatics. 10, 348
  • Human olfaction: from genomic variation to phenotypic diversity

    Authors: Hasin-Brumshtein Y., Lancet D. & Olender T. (2009), Trends in Genetics. 25, 4, p. 178-184
  • Mutations and lethality in simulated prebiotic networks

    Authors: Inger A., Solomon A., Shenhav B., Olender T. & Lancet D. (2009), Journal of Molecular Evolution. 69, 5, p. 568-578
  • Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

    Authors: Field Y., Fondufe-Mittendorf Y., Moore I. K., Mieczkowski P., Kaplan N., Lubling Y., Lieb J. D., Widom J. & Segal E. (2009), Nature Genetics. 41, 4, p. 438-445
  • Incorporating nucleosomes into thermodynamic models of transcription regulation

    Authors: Raveh - Sadka -. S. T., Levo M. & Segal E. (2009), Genome Research. 19, 8, p. 1480-1496
  • Evidence for an interaction of schizophrenia susceptibility loci on chromosome 6q23.3 and 10q24.33-q26.13 in Arab Israeli families

    Authors: Alkelai A., Kohn Y., Olender T., Sarner-Kanyas K., Rigbi A., Hamdan A., Ben-Asher E., Lancet D. & Lerer B. (2009), American Journal Of Medical Genetics Part B-Neuropsychiatric Genetics. 150, 7, p. 914-925
  • Can't live without them, can live with them: Roles of caspases during vital cellular processes

    Authors: Feinstein-Rotkopf Y. & Arama E. (2009), Apoptosis. 14, 8, p. 980-995
  • Further evidence for association of the RGS2 gene with antipsychotic-induced parkinsonism: Protective role of a functional polymorphism in the 3′-untranslated region

    Authors: Greenbaum L., Smith R. C., Rigbi A., Strous R., Teltsh O., Kanyas K., Korner M., Lancet D., Ben-Asher E. & Lerer B. (2009), Pharmacogenomics Journal. 9, 2, p. 103-110
  • Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy

    Authors: Lubliner S. & Segal E. (2009), Bioinformatics. 25, 12, p. i348-i355
  • From DNA sequence to transcriptional behaviour: A quantitative approach

    Authors: Segal E. & Widom J. (2009), Nature Reviews Genetics. 10, 7, p. 443-456
  • What controls nucleosome positions?

    Authors: Segal E. & Widom J. (2009), Trends in Genetics. 25, 8, p. 335-343
  • Bacterial intein-like domains of predatory bacteria: A new domain type characterized in Bdellovibrio bacteriovorus

    Authors: Dori-Bachash M., Dassa B., Peleg O., Pineiro S. A., Jurkevitch E. & Pietrokovski S. (2009), Functional & Integrative Genomics. 9, 2, p. 153-166
  • Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code

  • High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution

    Authors: Hasin Y., Olender T., Khen M., Gonzaga-Jauregui C., Kim P. M., Urban A. E., Snyder M., Gerstein M. B., Lancet D. & Korbel J. O. (2008), PLoS Genetics. 4, 11, e1000249
  • Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

    Authors: Shalem O., Dahan O., Levo M., Martinez M. R., Furman I., Segal E. & Pilpel Y. (2008), Molecular Systems Biology. 4, 4
  • Proteome-Based Comparative Analyses of Growth Stages Reveal New Cell Cycle-Dependent Functions in the Predatory Bacterium Bdellovibrio bacteriovorus

    Authors: Dori-Bachash M., Dassa B., Pietrokovski S. & Jurkevitch E. (2008), Applied and Environmental Microbiology. 74, 23, p. 7152-7162
  • Reconstruction of Cell Lineage Trees in Mice

    Authors: Wasserstrom A., Adar R., Shefer G., Frumkin D., Itzkovitz S., Stern T., Shur I., Zangi L., Kaplan S., Harmelin A., Reisner Y., Benayahu D., Tzahor E., Segal E. & Shapiro E. (2008), PLoS ONE. 3, 4, 1939
  • Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae

    Authors: Wang J., Fondufe-Mittendorf Y., Xi L., Tsai G., Segal E. & Widom J. (2008), PLoS Computational Biology. 4, 9
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation

    Authors: Segal E., Raveh - Sadka -. S. T., Schroeder M., Unnerstall U. & Gaul U. (2008), Nature. 451, 7178, p. 535-540
  • A feature-based approach to modeling protein-DNA interactions

    Authors: Sharon E., Lubliner S. & Segal E. (2008), PLoS Computational Biology. 4, 8, e1000154
  • Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells

    Authors: Minsky N., Shema E., Field Y., Schuster M., Segal E. & Oren M. (2008), Nature Cell Biology. 10, 4, p. 483-488
  • New Insights into the Autoinhibition Mechanism of Glycogen Synthase Kinase-3β

    Authors: Ilouz R., Pietrokovski S., Eisenstein M. & Eldar-Finkelman H. (2008), Journal of Molecular Biology. 383, 5, p. 999-1007
  • Why do young women smoke? V. Role of direct and interactive effects of nicotinic cholinergic receptor gene variation on neurocognitive function

    Authors: Rigbi A., Kanyas K., Yakir A., Greenbaum L., Pollak Y., Ben-Asher E., Lancet D., Kertzman S. & Lerer B. (2008), Genes Brain And Behavior. 7, 2, p. 164-172
  • Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity

    Authors: Baruch L., Itzkovitz S., Golan Mashiach M. M., Shapiro E. & Segal E. (2008), PLoS Computational Biology. 4, 7, e1000120
  • Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

    Authors: Field Y., Kaplan N., Fondufe-Mittendorf Y., Moore I. K., Sharon E., Lubling Y., Widom J. & Segal E. (2008), PLoS Computational Biology. 4, 11, e1000216
  • Module Map of Stem Cell Genes Guides Creation of Epithelial Cancer Stem Cells

    Authors: Wong D. J., Liu H., Ridky T. W., Cassarino D., Segal E. & Chang H. Y. (2008), Cell Stem Cell. 2, 4, p. 333-344
  • Revealing targeted therapy for human cancer by gene module maps

    Authors: Wong D. J., Nuyten D. S., Regev A., Lin M., Adler A. S., Segal E., Van De Vijver M. J. & Chang H. Y. (2008), Cancer Research. 68, 2, p. 369-378
  • Systematic functional characterization of cis-regulatory motifs in human core promoters

    Authors: Sinha S., Adler A. S., Field Y., Chang H. Y. & Segal E. (2008), Genome Research. 18, 3, p. 477-488
  • Reversal of aging by NFκB blockade

    Authors: Adler A. S., Kawahara T. L., Segal E. & Chang H. Y. (2008), Cell Cycle. 7, 5, p. 556-559
  • Genome-wide linkage scan, fine mapping, and haplotype analysis in a large, inbred, Arab Israeli pedigree suggest a schizophrenia susceptibility locus on chromosome 20p13

    Authors: Teltsh O., Kanyas K., Karni O., Levi A., Korner M., Ben-Asher E., Lancet D., Hamdan A., Lerer B. & Kohn Y. (2008), American Journal Of Medical Genetics Part B-Neuropsychiatric Genetics. 147B, 2, p. 209-215
  • Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes

  • Stemness, cancer and cancer stem cells

    Authors: Wong D. J., Segal E. & Chang H. Y. (2008),
  • Estimating cell depth from somatic mutations

    Authors: Wasserstrom A., Frumkin D., Adar R., Itzkovitz S., Stern T., Kaplan S., Shefer G., Shur I., Zangi L., Reizel Y., Harmelin A., Dor Y., Dekel N., Reisner Y., Benayahu D., Tzahor E., Segal E. & Shapiro E. (2008), PLoS Computational Biology. 4, 5, 1000058
  • Novel definition files for human GeneChips based on GeneAnnot

    Authors: Ferrari F., Bortoluzzi S., Coppe A., Sirota A., Safran M., Shmoish M., Ferrari S., Lancet D., Danieli G. A. & Bicciato S. (2007), BMC Bioinformatics. 8, 446
  • Association of the dopamine receptor interacting protein gene, NEF3, with early response to antipsychotic medication

    Authors: Strous R. D., Greenbaum L., Kanyas K., Merbl Y., Horowitz A., Karni O., Viglin D., Olender T., Deshpande S. N., Lancet D., Ben-Asher E. & Lerer B. (2007), International Journal of Neuropsychopharmacology. 10, 3, p. 321-333
  • Coevolution of compositional protocells and their environment

  • A feature-based approach to modeling protein-DNA interactions

    Authors: Sharon E. & Segal E. (2007), RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 4453, p. 77-91
  • Pharmacogenetics of glatiramer acetate therapy for multiple sclerosis reveals drug-response markers

    Authors: Grossman I., Avidan N., Singer C., Goldstaub D., Hayardeny L., Eyal E., Ben-Asher E., Paperna T., Pe'er I., Lancet D., Beckmann J. S. & Miller A. (2007), Pharmacogenetics and Genomics. 17, 8, p. 657-666
  • Haplotype structure and selection of the MDM2 oncogene in humans

    Authors: Atwal G. S., Bond G. L., Metsuyanim S., Papa M., Friedman E., Distelman-Menachem T., Ben-Asher E., Lancet D., Ross D. A., Sninsky J., White T. J., Levine A. J. & Yarden R. (2007), Proceedings of the National Academy of Sciences of the United States of America. 104, 11, p. 4524-4529
  • Mutations in olfactory signal transduction genes are not a major cause of human congenital general anosmia

    Authors: Feldmesser E., Bercovich D., Avidan N., Halbertal S., Haim L., Gross-Isseroff R., Goshen S. & Lancet D. (2007), Chemical Senses. 32, 1, p. 21-30
  • A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction

    Authors: Eyal E., Frenkel-Morgenstern M., Sobolev V. & Pietrokovski S. (2007), Proteins-Structure Function And Bioinformatics. 67, 1, p. 142-153
  • A module of negative feedback regulators defines growth factor signaling

    Authors: Amit I., Citri A., Shay T., Lu Y., Katz M., Zhang F., Tarcic G., Siwak D., Lahad J., Jacob-Hirsch J., Amariglio N., Vaisman N., Segal E., Rechavi G., Alon U., Mills G. B., Domany E. & Yarden Y. (2007), Nature Genetics. 39, 4, p. 503-512
  • Trans protein splicing of cyanobacterial split inteins in endogenous and exogenous combinations

    Authors: Dassa B., Amitai G., Caspi J., Schueler-Furman O. & Pietrokovski S. (2007), Biochemistry. 46, 1, p. 322-330
  • A ubiquitin ligase complex regulates caspase activation during sperm differentiation in Drosophila

    Authors: Arama E., Bader M., Rieckhof G. E. & Steller H. (2007), PLoS Biology. 5, 10, p. 2270-2287
  • The role of site accessibility in microRNA target recognition

    Authors: Kertesz M., Iovino N., Unnerstall U., Gaul U. & Segal E. (2007), Nature Genetics. 39, 10, p. 1278-1284
  • Rapid assessment of correlated amino acids from pair-to-pair (P2P) substitution matrices

    Authors: Eyal E., Pietrokovski S. & Bahar I. (2007), Bioinformatics. 23, 14, p. 1837-1839
  • The Drosophila caspases strica and dronc function redundantly in programmed cell death during oogenesis

    Authors: Baum J. S., Arama E., Steller H. & McCall K. (2007), Cell Death and Differentiation. 14, 8, p. 1508-1517
  • Search for hand osteoarthritis susceptibility locus on chromosome 6p12.3-p12.1

    Authors: Jakowlev K., Livshits G., Kalichman L., Ben-Asher E., Malkin I., Lancet D. & Kobyliansky E. (2007), Human Biology. 79, 1, p. 1-14
  • Genetic elucidation of human hyperosmia to isovaleric acid

    Authors: Menashe I., Abaffy T., Hasin Y., Goshen S., Yahalom V., Luetje C. W. & Lancet D. (2007), PLoS Biology. 5, 11, p. 2462-2468
  • Occurrence of protein structure elements in conserved sequence regions

    Authors: Sitbon E. & Pietrokovski S. (2007), Bmc Structural Biology. 7, 3
  • Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

    Authors: Rinn J. L., Kertesz M., Wang J. K., Squazzo S. L., Xu X., Brugmann S. A., Goodnough L. H., Helms J. A., Farnham P. J., Segal E. & Chang H. Y. (2007), Cell. 129, 7, p. 1311-1323
  • Zinc-ion binding and cytokine activity regulation pathways predicts outcome in relapsing-remitting multiple sclerosis

    Authors: Achiron A., Gurevich M., Snir Y., Segal E. & Mandel M. (2007), Clinical and Experimental Immunology. 149, 2, p. 235-242
  • Refining intra-protein contact prediction by graph analysis

    Authors: Frenkel-Morgenstern M., Magid R., Eyal E. & Pietrokovski S. (2007), BMC Bioinformatics. 8, SUPPL. 5, S6
  • A transcriptional program mediating entry into cellular quiescence

    Authors: Liu H., Adler A. S., Segal E. & Chang H. Y. (2007), PLoS Genetics. 3, 6, p. 996-1008
  • InSite: A computational method for identifying protein-protein interaction binding sites on a proteome-wide scale

    Authors: Wang H., Segal E., Ben-Hur A., Li Q. R., Vidal M. & Koller D. (2007), GENOME BIOLOGY. 8, 9, R192
  • Question 7: The first units of life were not simple cells

    Authors: Norris V., Hunding A., Kepes F., Lancet D., Minsky A., Raine D., Root-Bernstein R. & Sriram K. (2007), Origins of Life and Evolution of Biospheres. 37, 4-5, p. 429-432
  • Molecular Recognition in Biology: Models for Analysis of Protein-Ligand Interactions

    Authors: Lancet D., Horovitz A. & Katchalski-Katzir E. (2007), The Lock-and-Key Principle, The State of the Art--100 Years On. Vol. 1. p. 25-71
  • Decoding global gene expression programs in liver cancer by noninvasive imaging

    Authors: Segal E., Sirlin C. B., Ooi C., Adler A. S., Gollub J., Chen X., Chan B. K., Matcuk G. R., Barry C. T., Chang H. Y. & Kuo M. D. (2007), Nature biotechnology. 25, 6, p. 675-680
  • Association of the RGS2 gene with extrapyramidal symptoms induced by treatment with antipsychotic medication

    Authors: Greenbaum L., Strous R. D., Kanyas K., Merbl Y., Horowitz A., Karni O., Katz E., Kotler M., Olender T., Deshpande S. N., Lancet D., Ben-Asher E. & Lerer B. (2007), Pharmacogenetics and Genomics. 17, 7, p. 519-528
  • Motif module map reveals enforcement of aging by continual NF-κB activity

    Authors: Adler A. S., Sinha S., Kawahara T. L., Zhang J. Y., Segal E. & Chang H. Y. (2007), GENES & DEVELOPMENT. 21, 24, p. 3244-3257
  • ZIPK: A unique case of murine-specific divergence of a conserved vertebrate gene

    Authors: Shoval Y., Pietrokovski S. & Kimchi A. (2007), PLoS Genetics. 3, 10, p. 1884-1893
  • Widespread ectopic expression of olfactory receptor genes

    Authors: Feldmesser E., Olender T., Khen M., Yanai I., Ophir R. & Lancet D. (2006), BMC Genomics. 7
  • Detection of apoptosis by terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling and acridine orange in Drosophila embryos and adult male gonads

    Authors: Arama E. & Steller H. (2006), Nature Protocols. 1, 4, p. 1725-1731
  • Expoldb: Expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats

    Authors: Sharma V. K., Sharma A., Kumar N., Khandelwal M., Mandapati K. K., Horn-Saban S., Strichman-Almashanu L., Lancet D., Brahmachari S. K. & Ramachandran S. (2006), BMC Genomics. 7, 258
  • The association of DNA sequence variation at the MAOA genetic locus with quantitative behavioural traits in normal males

    Authors: Rosenberg S., Templeton A. R., Feigin P. D., Lancet D., Beckmann J. S., Selig S., Hamer D. H. & Skorecki K. (2006), Human Genetics. 120, 4, p. 447-459
  • Variations in the human olfactory receptor pathway

    Authors: Menashe I. & Lancet D. (2006), Cellular and Molecular Life Sciences. 63, 13, p. 1485-1493
  • ATM haplotypes and breast cancer risk in Jewish high-risk women

    Authors: Koren M., Kimmel G., Ben-Asher E., Gal I., Papa M. Z., Beckmann J. S., Lancet D., Shamir R. & Friedman E. (2006), British Journal of Cancer. 94, 10, p. 1537-1543
  • The two Drosophila cytochrome C proteins can function in both respiration and caspase activation

    Authors: Arama E., Bader M., Srivastava M., Bergmann A. & Steller H. (2006), EMBO Journal. 25, 1, p. 232-243
  • Why do young women smoke? I. Direct and interactive effects of environment, psychological characteristics and nicotinic cholinergic receptor genes

    Authors: Greenbaum L., Kanyas K., Karni O., Merbl Y., Olender T., Horowitz A., Yakir A., Lancet D., Ben-Asher E. & Lerer B. (2006), Molecular Psychiatry. 11, 3, p. 312-322
  • Ancient genomic architecture for mammalian olfactory receptor clusters

    Authors: Aloni R., Olender T. & Lancet D. (2006), GENOME BIOLOGY. 7, 10, R88
  • Cytochrome c-d regulates developmental apoptosis in the Drosophila retina

    Authors: Mendes C. S., Arama E., Brown S., Scherr H., Srivastava M., Bergmann A., Steller H. & Mollereau B. (2006), EMBO Reports. 7, 9, p. 933-939
  • Nuclear import of Ho endonuclease utilizes two nuclear localization signals and four importins of the ribosomal import system

    Authors: Bakhrat A., Baranes K., Krichevsky O., Rom I., Schlenstedt G., Pietrokovski S. & Raveh D. (2006), Journal of Biological Chemistry. 281, 18, p. 12218-12226
  • The trace amine receptor 4 gene is not associated with schizophrenia in a sample linked to chromosome 6q23 [3]

    Authors: Amann D., Avidan N., Kanyas K., Kohn Y., Hamdan A., Ben-Asher E., Macciardi F., Beckmann J., Lancet D. & Lerer B. (2006),
  • Hsp90 recognizes a common surface on client kinases

    Authors: Citri A., Harari D., Shohat G., Ramakrishnan P., Gan J., Lavi S., Eisenstein M., Kimchi A., Wallach D., Pietrokovski S. & Yarden Y. (2006), Journal of Biological Chemistry. 281, 20, p. 14361-14369
  • AHI1, a pivotal neurodevelopmental gene, and C6orf217 are associated with susceptibility to schizophrenia

    Authors: Amann Zalcenstein D., Avidan N., Kanyas K., Ebstein R. P., Kohn Y., Hamdan A., Ben-Asher E., Karni O., Mujaheed M., Segman R. H., Maier W., Macciardi F., Beckmann J. S., Lancet D. & Lerer B. (2006), European Journal of Human Genetics. 14, 10, p. 1111-1119
  • Compositional complementarity and prebiotic ecology in the origin of life

    Authors: Hunding A., Kepes F., Lancet D., Minsky A., Norris V., Raine D., Sriram K. & Root-Bernstein R. (2006), BioEssays. 28, 4, p. 399-412
  • A genomic code for nucleosome positioning

    Authors: Segal E., Fondufe-Mittendorf Y., Chen L., Thastroem A., Field Y., Moore I. K., Wang J. Z. & Widom J. (2006), Nature. 442, 7104, p. 772-778
  • A probabilistic classifier for olfactory receptor pseudogenes

    Authors: Menashe I., Aloni R. & Lancet D. (2006), BMC Bioinformatics. 7, 393
  • LEMD3: The gene responsible for bone density disorders (osteopoikilosis)

    Authors: Ben-Asher E., Zelzer E. & Lancet D. (2005), Israel Medical Association Journal. 7, 4, p. 273-274
  • Assessing natural variations in gene expression in humans by comparing with monozygotic twins using microarrays

    Authors: Sharma A., Sharma V., Horn-Saban S., Lancet D., Ramachandran S. & Brahmachari S. (2005), Physiological Genomics. 21, p. 117-123
  • Mitochondrial carrier homolog 2 is a target of tBID in cells signaled to die by tumor necrosis factor alpha

    Authors: Grinberg M., Schwarz M., Zaltsman Y., Eini T., Niv H., Pietrokovski S. & Gross A. (2005), Molecular and Cellular Biology. 25, 11, p. 4579-4590
  • Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure

    Authors: Frenkel-Morgenstern M., Voet H. & Pietrokovski S. (2005), Bioinformatics. 21, 13, p. 2950-2956
  • Genotype phenotype correlations in Israeli colorectal cancer patients

    Authors: Starinsky S., Figer A., Ben-Asher E., Geva R., Flex D., Fidder H., Zidan J., Lancet D. & Friedman E. (2005), International Journal of Cancer. 114, 1, p. 58-73
  • Algal viruses with distinct intraspecies host specificities include identical intein elements

    Authors: Nagasaki K., Shirai Y., Tomaru Y., Nishida K. & Pietrokovski S. (2005), Applied and Environmental Microbiology. 71, 7, p. 3599-3607
  • Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

    Authors: Yanai I., Benjamin H., Shmoish M., Chalifa-Caspi V., Shklar M., Ophir R., Bar-Even A., Horn-Saban S., Safran M., Domany E., Lancet D. & Shmueli O. (2005), Bioinformatics. 21, 5, p. 650-659
  • The autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants

    Authors: Slavikova S., Shy G., Yao Y., Giozman R., Levanony H., Pietrokovski S., Elazar Z. & Galili G. (2005), Journal of Experimental Botany. 56, 421, p. 2839-2849
  • GeneTide - Terra Incognita Discovery Endeavor: A new transcriptome focused member of the GeneCards/GeneNote suite of databases

    Authors: Shklar M., Strichman-Almashanu L., Shmueli O., Shmoish M., Safran M. & Lancet D. (2005), Nucleic Acids Research. 33, DATABASE ISS., p. D556-D561
  • Modular genes with metazoan-specific domains have increased tissue specificity

    Authors: Cohen-Gihon I., Lancet D. & Yanai I. (2005),
  • Polymer gard: Computer simulation of covalent bond formation in reproducing molecular assemblies

    Authors: Shenhav B., Bar-Even A., Kafri R. & Lancet D. (2005), Origins of Life and Evolution of the Biosphere. 35, 2, p. 111-133
  • Separating the contribution of translational and rotational diffusion to protein association

    Authors: Kuttner Y., Kozer N., Segal E., Schreiber G. & Haran G. (2005), Journal of the American Chemical Society. 127, 43, p. 15138-15144
  • Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

    Authors: Kopelman N., Lancet D. & Yanai I. (2005), Nature Genetics. 37, 6, p. 588-589
  • Conservation anchors in the vertebrate genome

    Authors: Aloni R. & Lancet D. (2005), GENOME BIOLOGY. 6, 7, 115
  • Early systems biology and prebiotic networks

    Authors: Shenhav B., Solomon A., Lancet D. & Kafri R. (2005), Transactions On Computational Systems Biology I. p. 14-27
  • One-Block CYRCA: An automated procedure for identifying multiple-block alignments from single block queries

    Authors: Frenkel-Morgenstern M., Singer A., Bronfeld H. & Pietrokovski S. (2005), Nucleic Acids Research. 33, SUPPL. 2, p. W281-W283
  • Graded artificial chemistry in restricted boundaries

  • Protein splicing and auto-cleavage of bacterial intein-like domains lacking a C '-flanking nucleophilic residue

    Authors: Dassa B., Haviv H., Amitai G. & Pietrokovski S. (2004), Journal of Biological Chemistry. 279, 31, p. 32001-32007
  • The lipid world: From catalytic and informational headgroups to micelle replication and evolution without nucleic acids

  • GeneAnnot: Comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes

    Authors: Chalifa-Caspi V., Yanai I., Ophir R., Rosen N., Shmoish M., Benjamin-Rodrig H., Shklar M., Stein T., Shmueli O., Safran M. & Lancet D. (2004), Bioinformatics. 20, 9, p. 1457-1458
  • Genomic profiling of interpopulation diversity guides prioritization of candidate-genes for autoimmunity

    Authors: Grossman I., Avidan N., Singer C., Paperna T., Lancet D., Beckmann J. & Miller A. (2004), Genes and Immunity. 5, 6, p. 493-504
  • The canine olfactory subgenome

    Authors: Olender T., Fuchs T., Linhart C., Shamir R., Adams M., Kalush F., Khen M. & Lancet D. (2004), Genomics. 83, 3, p. 361-372
  • Prospects of a computational origin of life endeavor

  • Protein Splicing of Inteins with Atypical Glutamine and Aspartate C-terminal Residues

    Authors: Amitai G., Dassa B. & Pietrokovski S. (2004), Journal of Biological Chemistry. 279, 5, p. 3121-3131
  • NIPBL gene responsible for Cornelia de Lange syndrome, a severe developmental disorder

    Authors: Ben-Asher E. & Lancet D. (2004), Israel Medical Association Journal. 6, 9, p. 571-572
  • A new gene for the Charcot-Marie-Tooth disorder

    Authors: Ben-Asher E. & Lancet D. (2004),
  • 5-lipoxygenase activating protein (ALOX5AP): Association with cardiovascular infarction and stroke

    Authors: Ben-Asher E. & Lancet D. (2004), Israel Medical Association Journal. 6, 5, p. 318-319
  • Prediction of the odorant binding site of olfactory receptor proteins by human-mouse comparisons

    Authors: Man O., Gilad Y. & Lancet D. (2004), Protein Science. 13, 1, p. 240-254
  • Is the G72/G30 locus associated with schizophrenia? Single nucleotide polymorphisms, haplotypes, and gene expression analysis

    Authors: Korostishevsky M., Kaganovich M., Cholostoy A., Ashkenazi M., Ratner Y., Dahary D., Bernstein J., Bening-Abu-Shach U., Ben-Asher E., Lancet D., Ritsner M. & Navon R. (2004), Biological Psychiatry. 56, 3, p. 169-176
  • Recent innovations in the genecards suite

    Authors: Safran A. & Lancet D. (2004),
  • Network analysis of protein structures identifies functional residues

    Authors: Amitai G., Shemesh A., Sitbon E., Shklar M., Netanely D., Venger I. & Pietrokovski S. (2004), Journal of Molecular Biology. 344, 4, p. 1135-1146
  • Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates

    Authors: Gilad Y., Wiebel V., Przeworski M., Lancet D. & Paabo S. (2004), PLoS Biology. 2, 1
  • Probability rule for chiral recognition

    Authors: Kafri R. & Lancet D. (2004), Chirality. 16, 6, p. 369-378
  • New type of polyubiquitin-like genes with intein-like autoprocessing domains

    Authors: Dassa B., Yanai I. & Pietrokovski S. (2004),
  • Computer simulation of protocells

    Authors: Lancet D. (2003), Computational Methods In Systems Biology, Proceedings. 2602, p. 194-197
  • An eNose algorithm for identifying chemicals and determining their concentration

    Authors: Carmel L., Sever N., Lancet D. & Harel D. (2003), Sensors And Actuators B-Chemical. 93, 1-3, p. 77-83
  • GeneLoc: Exon-based integration of human genome maps

    Authors: Rosen N., Chalifa-Caspi V., Shmueli O., Adato A., Lapidot M., Stampnitzky J., Safran M. & Lancet D. (2003), Bioinformatics. 19, SUPPL. 1, p. i222-i224
  • Human Olfactory Receptors

    Authors: Man O., Olender T. & Lancet D. (2003), Handbook of Cell Signaling. 1-3, p. 145-147
  • Mesobiotic emergence: Molecular and ensemble complexity in early evolution

    Authors: Shenhav B., Segre D. & Lancet D. (2003),
  • A feature extraction method for chemical sensors in electronic noses

    Authors: Carmel L., Levy S., Lancet D. & Harel D. (2003), Sensors And Actuators B-Chemical. 93, 1-3, p. 67-76
  • Human specific loss of olfactory receptor genes

  • GeneNote: Whole genome expression profiles in normal human tissues

    Authors: Shmueli O., Horn-Saban S., Chalifa-Caspi V., Shmoish M., Ophir R., Benjamin-Rodrig H., Safran M., Domany E. & Lancet D. (2003), Comptes Rendus Biologies. 326, 10-11, p. 1067-1072
  • Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data

    Authors: Segal E., Shapira M., Regev A., Pe'er D., Botstein D., Koller D. & Friedman N. (2003), Nature Genetics. 34, 2, p. 166-176
  • From subgenome analysis to protein structure

    Authors: Man O., Atarot T., Sadot A., Olender T. & Lancet D. (2003), Current Opinion in Structural Biology. 13, 3, p. 353-358
  • Natural selection on the olfactory receptor gene family in humans and chimpanzees

    Authors: Gilad Y., Bustamante C., Lancet D. & Paabo S. (2003), American Journal of Human Genetics. 73, 3, p. 489-501
  • Human gene-centric databases at the Weizmann Institute of science: GeneCards, UDB, CroW 21 and HORDE

    Authors: Safran M., Chalifa-Caspi V., Shmueli O., Olender T., Lapidot M., Rosen N., Shmoish M., Peter Y., Glusman G., Feldmesser E., Adato A., Peter I., Khen M., Atarot T., Groner Y. & Lancet D. (2003), Nucleic Acids Research. 31, 1, p. 142-146
  • Distribution and function of new bacterial intein-like protein domains

    Authors: Amitai G., Belenkiy O., Dassa B., Shainskaya A. & Pietrokovski S. (2003), Molecular Microbiology. 47, 1, p. 61-73
  • Caspase activity and a specific cytochrome c are required for sperm differentiation in Drosophila

    Authors: Arama E., Agapite J. & Steller H. (2003), Developmental Cell. 4, 5, p. 687-697
  • Towards an odor communication system

    Authors: Harel D., Carmel L. & Lancet D. (2003), Computational Biology and Chemistry. 27, 2, p. 121-133
  • Distribution of split DnaE inteins in cyanobacteria

    Authors: Caspi J., Amitai G., Belenkiy O. & Pietrokovski S. (2003), Molecular Microbiology. 50, 5, p. 1569-1577
  • Different noses for different people

    Authors: Menashe I., Man O., Lancet D. & Gilad Y. (2003), Nature Genetics. 34, 2, p. 143-144
  • New types of conserved sequence domains in DNA-binding regions of homing endonucleases

    Authors: Sitbon E. & Pietrokovski S. (2003),
  • A new gene causing sudden cardiac death in children from a Bedouin tribe in North Israel

    Authors: Lahat H., Olender T., Avidan N., Ben-Asher E., Man O., Levy-Nissenbaum E., Khoury A., Lorber A., Goldman B., Lancet D., Eldar M. & Pras E. (2002),
  • USH3A transcripts encode clarin-1, a four-transmembrane-domain protein with a possible role in sensory synapses

    Authors: Adato A., Vreugde S., Joensuu T., Avidan N., Hamalainen R., Belenkiy O., Olender T., Bonne-Tamir B., Ben-Asher E., Espinos C., Millan J., Lehesjoki A., Flannery J., Avraham K., Pietrokovski S., Sankila E., Beckmann J. & Lancet D. (2002), European Journal of Human Genetics. 10, 6, p. 339-350
  • GeneCards™ 2002: Towards a complete, object-oriented, human gene compendium

    Authors: Safran M., Solomon I., Shmueli O., Lapidot M., Shen-Orr S., Adato A., Ben-Dor U., Esterman N., Rosen N., Peter I., Olender T., Chalifa-Caspi V. & Lancet D. (2002), Bioinformatics. 18, 11, p. 1542-1543
  • Evidence for positive selection and population structure at the human MAO-A gene

    Authors: Gilad Y., Rosenberg S., Przeworski M., Lancet D. & Skorecki K. (2002), Proceedings of the National Academy of Sciences of the United States of America. 99, 2, p. 862-867
  • Pharmacogenetic development of personalized medicine: Multiple sclerosis treatment as a model

    Authors: Kirstein-Grossman I., Beckmann J., Lancet D. & Miller A. (2002), Drug News and Perspectives. 15, 9, p. 558-567
  • Test of a statistical model for molecular recognition in biological repertoires

    Authors: Rosenwald S., Kafri R. & Lancet D. (2002), Journal of Theoretical Biology. 216, 3, p. 327-336
  • Population differences in haplotype structure within a human olfactory receptor gene cluster

    Authors: Menashe I., Man O., Lancet D. & Gilad Y. (2002), Human Molecular Genetics. 11, 12, p. 1381-1390
  • DEFOG: A practical scheme for deciphering families of genes

    Authors: Fuchs T., Malecova B., Linhart C., Sharan R., Khen M., Herwig R., Shmulevich D., Elkon R., Steinfath M., O'Brien J., Radelof U., Lehrach H., Lancet D. & Shamir R. (2002), Genomics. 80, 3, p. 295-302
  • Computational capacity of an odorant discriminator: The linear separability of curves

    Authors: Caticha N., Tejada J., Lancet D. & Domany E. (2002), Neural Computation. 14, 9, p. 2201-2220
  • The human olfactory subgenome: from sequence to structure and evolution

    Authors: Fuchs T., Glusman G., Horn-Saban S., Lancet D. & Pilpel Y. (2001), Human Genetics. 108, 1, p. 1-13
  • Exact Inference in Networks with Discrete Children of Continuous Parents

    Authors: Lerner U., Segal E. & Koller D. (2001), Conference on Uncertainty in Artificial Intelligence. p. 319-328
  • Consistency analysis of similarity between multiple alignments: Prediction of protein function and fold structure from analysis of local sequence motifs

    Authors: Kunin V., Chan B., Sitbon E., Lithwick G. & Pietrokovski S. (2001), Journal of Molecular Biology. 307, 3, p. 939-949
  • Architecture and anatomy of the genomic locus encoding the human leukemia-associated transcription factor RUNX1/AML1

    Authors: Levanon D., Glusman C., Bangsow T., Ben-Asher E., Male D., Avidan N., Bangsow C., Hattori M., Taylor T., Taudien S., Blechschmidt K., Shimizu N., Rosenthal A., Sakaki Y., Lancet D. & Groner Y. (2001), Gene. 262, 1-2, p. 23-33
  • Visualizing large-scale genomic sequences: The GESTALT workbench produces interactive genome graphs for quick and intuitive sequence interpretation

  • Mouse-human orthology relationships in an olfactory receptor gene cluster

    Authors: Lapidot M., Pilpel Y., Gilad Y., Falcovitz A., Sharon D., Haaf T. & Lancet D. (2001), Genomics. 71, 3, p. 296-306
  • The Lipid World

    Authors: Segre D., Ben-Eli D., Deamer D. & Lancet D. (2001), Origins of Life and Evolution of the Biosphere. 31, 1-2, p. 119-145
  • Estimating the size of the olfactory repertoire

    Authors: Carmel L., Harel D. & Lancet D. (2001), Bulletin of Mathematical Biology. 63, 6, p. 1063-1078
  • A missense mutation in a highly conserved region of CASQ2 is associated with autosomal recessive catecholamine-induced polymorphic ventricular tachycardia in Bedouin families from Israel

    Authors: Lahat H., Pras E., Olender T., Avidan N., Ben-Asher E., Man O., Levy-Nissenbaum E., Khoury A., Lorber A., Goldman B., Lancet D. & Eldar M. (2001), American Journal of Human Genetics. 69, 6, p. 1378-1384
  • Initial sequencing and analysis of the human genome

    Authors: Lancet D. (2001), Nature. 409, 6822, p. 860-921
  • The UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase gene is mutated in recessive hereditary inclusion body myopathy

    Authors: Eisenberg I., Avidan N., Potikha T., Hochner H., Chen M., Olender T., Barash M., Shemesh M., Sadeh M., Grabov-Nardini G., Shmilevich I., Friedmann A., Karpati G., Bradley W., Baumbach L., Lancet D., Ben-Asher E., Beckmann J. & Argov Z. (2001), Nature Genetics. 29, 1, p. 83-87
  • The molecular roots of compositional inheritance

    Authors: Segre D., Shenhav B., Kafri R. & Lancet D. (2001), Journal of Theoretical Biology. 213, 3, p. 481-491
  • Intein spread and extinction in evolution

    Authors: Pietrokovski S. (2001), Trends in Genetics. 17, 8, p. 465-472
  • Mucolipidosis type IV: Novel MCOLN1 mutations in Jewish and Mon-Jewish patients and the frequency of the disease in the Ashkenazi Jewish population

    Authors: Bargal R., Avidan N., Olender T., Ben-Asher E., Zeigler M., Raas-Rothschild A., Frumkin A., Ben-Yoseph O., Friedlender Y., Lancet D. & Bach G. (2001), Human Mutation. 17, 5, p. 397-402
  • The RUNX3 gene - Sequence, structure and regulated expression

    Authors: Bangsow C., Rubins N., Glusman G., Bernstein Y., Negreanu V., Goldenberg D., Lotem J., Ben-Asher E., Lancet D., Levanon D. & Groner Y. (2001), Gene. 279, 2, p. 221-232
  • The complete human olfactory subgenome

    Authors: Glusman G., Yanai I., Rubin I. & Lancet D. (2001), Genome Research. 11, 5, p. 685-702
  • Doublecortin mutations cluster in evolutionarily conserved functional domains

    Authors: Sapir T., Horesh D., Caspi M., Atlas R., Burgess H., Wolf S. G., Francis F., Chelly J., Elbaum M., Pietrokovski S. & Reiner O. (2000), Human Molecular Genetics. 9, 5, p. 703-712
  • Compositional genomes: Prebiotic information transfer in mutually catalytic noncovalent assemblies

  • Identification of the gene causing mucolipidosis type IV

    Authors: Bargal R., Avidan N., Ben-Asher E., Olender Z., Zeigler M., Frumkin A., Raas-Rothschild A., Glusman G., Lancet D. & Bach G. (2000), Nature Genetics. 26, 1, p. 118-121
  • Identification and characterization of coding single-nucleotide polymorphisms within a human olfactory receptor gene cluster

    Authors: Sharon D., Gilad Y., Glusman G., Khen M., Lancet D. & Kalush F. (2000), Gene. 260, 1-2, p. 87-94
  • Prebiotic evolution of amphiphilic assemblies far from equilibrium: From compositional information to sequence-based biopolymers

    Authors: Segre D., Ben-Eli D. & Lancet D. (2000), Bioastronomy'99, A New Era In Bioastronomy, Proceedings. 213, p. 373-+
  • Composing life

    Authors: Segré D. & Lancet D. (2000), EMBO Reports. 1, 3, p. 217-222
  • The genomic structure of human olfactory receptor genes

    Authors: Sosinsky A., Glusman G. & Lancet D. (2000), Genomics. 70, 1, p. 49-61
  • Harvesting the human genome: The Israeli perspective

    Authors: Ben-Asher E., Chalifa-Caspi V., Horn-Saban S., Avidan N., Olender Z., Adato A., Glusman G., Safran M., Rubinstein M. & Lancet D. (2000), Israel Medical Association Journal. 2, 9, p. 657-664
  • GESTALT: A workbench for automatic integration and visualization of large-scale genomic sequence analyses

    Authors: Glusman G. & Lancet D. (2000),
  • The olfactory receptor gene superfamily: Data mining, classification, and nomenclature

    Authors: Glusman G., Bahar A., Sharon D., Pilpel Y., White J. & Lancet D. (2000), Mammalian Genome. 11, 11, p. 1016-1023
  • Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes

    Authors: Gilad Y., Segre D., Skorecki K., Nachman M., Lancet D. & Sharon D. (2000), Nature Genetics. 26, 2, p. 221-224
  • Sequence, structure, and evolution of a complete human olfactory receptor gene cluster

    Authors: Glusman G., Sosinsky A., Ben-Asher E., Avidan N., Sonkin D., Bahar A., Rosenthal A., Clifton S., Roe B., Ferraz C., Demaille J. & Lancet D. (2000), Genomics. 63, 2, p. 227-245
  • Blocks-based methods for detecting protein homology

    Authors: Henikoff J. G., Pietrokovski S., McCallum C. M. & Henikoff S. (2000), Electrophoresis. 21, 9, p. 1700-1706
  • Fine-tuning an engineered intein

    Authors: Amitai G. & Pietrokovski S. (1999),
  • Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations

    Authors: Henikoff S., Henikoff J. G. & Pietrokovski S. (1999), Bioinformatics. 15, 6, p. 471-479
  • kPROT: A knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction

    Authors: Pilpel Y., Ben-Tal N. & Lancet D. (1999), Journal of Molecular Biology. 294, 4, p. 921-935
  • The variable and conserved interfaces of modeled olfactory receptor proteins

    Authors: Pilpel Y. & Lancet D. (1999), Protein Science. 8, 5, p. 969-977
  • Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum ΔH

    Authors: Kelman Z., Pietrokovski S. & Hurwitz J. (1999), Journal of Biological Chemistry. 274, 40, p. 28751-28761
  • GARDobes: Primordial cell nano-precursors with organic catalysis, compositional genome and capacity to evolve

    Authors: Segre D., Ben-Eli D., Pilpel Y., Kedem O. & Lancet D. (1999),
  • Molecular biology of olfactory receptors

    Authors: Pilpel Y., Sosinsky A. & Lancet D. (1999), Molecular Biology of the Brain. p. 93-104
  • Primate evolution of an olfactory receptor cluster: Diversification by gene conversion and recent emergence of pseudogenes

    Authors: Sharon D., Glusman G., Pilpel Y., Khen M., Gruetzner F., Haaf T. & Lancet D. (1999), Genomics. 61, 1, p. 24-36
  • Olfaction: Good reception in fruitfly antennae

    Authors: Pilpel Y. & Lancet D. (1999), Nature. 398, 6725, p. 285-287