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All Publications

  • Phenome-wide associations of sleep characteristics in the Human Phenotype Project

    Authors: Kohn S., Diament A., Godneva A., Dhir R., Weinberger A., Reisner Y., Rossman H. & Segal E. (2025), Nature Medicine. 31, 3, p. 1026-1037, 4881

  • Metagenome-informed metaproteomics of the human gut microbiome, host, and dietary exposome uncovers signatures of health and inflammatory bowel disease

    Authors: Valdés-Mas R., Leshem A., Zheng D., Cohen Y., Kern L., Zmora N., He Y., Katina C., Eliyahu-Miller S., Yosef-Hevroni T., Richman L., Raykhel B., Allswang S., Better R., Shmueli M., Saftien A., Cullin N., Slamovitz F., Ciocan D., Ouyang K. S., Mor U., Dori-Bachash M., Molina S., Levin Y., Atarashi K., Jona G., Puschhof J., Harmelin A., Stettner N., Chen M., Suez J., Honda K., Lieb W., Bang C., Kori M., Maharshak N., Merbl Y., Shibolet O., Halpern Z., Shouval D. S., Shamir R., Franke A., Abdeen S. K., Shapiro H., Savidor A. & Elinav E. (2025), Cell. 188, 4, p. 1062-1083.e36

  • Dust storm-driven dispersal of potential pathogens and antibiotic resistance genes in the Eastern Mediterranean

    Authors: Erkorkmaz B. A., Zeevi D. & Rudich Y. (2025), Science of the Total Environment. 958, 178021

  • Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

    Authors: Smith B. J., Zhao C., Dubinkina V., Jin X., Zahavi L., Shoer S., Moltzau-Anderson J., Segal E. & Pollard K. S. (2025), Genome Research. 35, 5, p. 1247-1260

  • Diet-microbiome interactions in cancer

    Authors: Abdeen S. K., Mastandrea I., Stinchcombe N., Puschhof J. & Elinav E. (2025), Cancer Cell. 43, 4, p. 680-707

  • Clinical translation of microbiome research

    Authors: Gilbert J. A., Azad M. B., Bäckhed F., Blaser M. J., Byndloss M., Chiu C. Y., Chu H., Dugas L. R., Elinav E., Gibbons S. M., Gilbert K. E., Henn M. R., Ishaq S. L., Ley R. E., Lynch S. V., Segal E., Spector T. D., Strandwitz P., Suez J., Tropini C., Whiteson K. & Knight R. (2025), Nature Medicine. 31, 4, p. 1099-1113

  • International consensus statement on microbiome testing in clinical practice

    Authors: Porcari S., Mullish B. H., Asnicar F., Ng S. C., Zhao L., Hansen R., O'Toole P. W., Raes J., Hold G., Putignani L., Hvas C. L., Zeller G., Koren O., Tun H., Valles-Colomer M., Collado M. C., Fischer M., Allegretti J., Iqbal T., Chassaing B., Keller J., Baunwall S. M., Abreu M., Barbara G., Zhang F., Ponziani F. R., Costello S. P., Paramsothy S., Kao D., Kelly C., Kupcinskas J., Youngster I., Franceschi F., Khanna S., Vehreschild M., Link A., De Maio F., Pasolli E., Miguez A. B., Brigidi P., Posteraro B., Scaldaferri F., Stojanovic M. R., Megraud F., Malfertheiner P., Masucci L., Arumugam M., Kaakoush N., Segal E., Bajaj J., Leong R., Cryan J., Weersma R. K., Knight R., Guarner F., Shanahan F., Cani P. D., Elinav E., Sanguinetti M., de Vos W. M., El-Omar E., Dorè J., Marchesi J., Tilg H., Sokol H., Segata N., Cammarota G., Gasbarrini A. & Ianiro G. (2025), The Lancet Gastroenterology and Hepatology. 10, 2, p. 154-167

  • From big data and experimental models to clinical trials: Iterative strategies in microbiome research

    Authors: Turjeman S., Rozera T., Elinav E., Ianiro G. & Koren O. (2025), Cell. 188, 5, p. 1178-1197

  • Unraveling Cross-Organ Impacts of Airborne Pollutants: A Multiomics Study on Respiratory Exposure and Gastrointestinal Health

    Authors: Liu B., Wang G., Wang L., Yan J., Zhu K., Liu Q., Zhao J., Jia B., Fang M., Rudich Y., Morawska L. & Chen J. (2024), Environmental Science & Technology. 58, 35, p. 15511-15521

  • Plasmid-encoded toxin defence mediates mutualistic microbial interactions

    Authors: Moraïs S., Mazor M., Tovar-Herrera O., Zehavi T., Zorea A., Ifrach M., Bogumil D., Brandis A., Walter J., Elia N., Gur E. & Mizrahi I. (2024), Nature Microbiology. 9, 1, p. 108-119

  • Competitive fungal commensalism mitigates candidiasis pathology

    Authors: Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024), Journal of Experimental Medicine. 221, 5, e20231686

  • Target Search Processes During Horizontal Gene Transfer in Bacteria

    Authors: Arbel-Goren R. & Stavans J. (2024), Target Search Problems. Grebenkov D., Oshanin G. & Metzler R. (eds.). p. 675-686

  • Faecal Transplantation for Ulcerative Colitis From Diet Conditioned Donors Followed by Dietary Intervention Results in Favourable Gut Microbial Profile Compared to Faecal Transplantation Alone

    Authors: Leibovitzh H., Shabat C. S., Hirsch A., Zittan E., Mentella M. C., Petito V., Cohen N. A., Ron Y., Isakov N. F., Pfeffer J., Yaakov M., Fanali C., Turchini L., Masucci L., Quaranta G., Kolonimos N., Godneva A., Weinberger A., Scaldaferri F. & Maharshak N. (2024), Journal of Crohn's and Colitis. 18, 10, p. 1606-1614

  • Embracing cancer complexity: Hallmarks of systemic disease

    Authors: Swanton C., Bernard E., Abbosh C., André F., Auwerx J., Balmain A., Bar-Sagi D., Bernards R., Bullman S., DeGregori J., Elliott C., Erez A., Evan G., Febbraio M. A., Hidalgo A., Jamal-Hanjani M., Joyce J. A., Kaiser M., Lamia K., Locasale J. W., Loi S., Malanchi I., Merad M., Musgrave K., Patel K. J., Quezada S., Wargo J. A., Weeraratna A., White E., Winkler F., Wood J. N., Vousden K. H. & Hanahan D. (2024), Cell. 187, 7, p. 1589-1616

  • Rab7-dependent regulation of goblet cell protein CLCA1 modulates gastrointestinal homeostasis

    Authors: Gaur P., Rajendran Y., Srivastava B., Markandey M., Fishbain-Yoskovitz V., Mohapatra G., Suhail A., Chaudhary S., Tyagi S., Yadav S. C., Pandey A. K., Merbl Y., Bajaj A., Ahuja V. & Srikanth C. (2024), eLife. 12, RP89776

  • The potential importance of the built-environment microbiome and its impact on human health

    Authors: Bosch T. C., Wigley M., Colomina B., Bohannan B., Meggers F., Amato K. R., Azad M. B., Blaser M. J., Brown K., Dominguez-Bello M. G., Ehrlich S. D., Elinav E., Finlay B. B., Geddie K., Geva-Zatorsky N., Giles-Vernick T., Gros P., Guillemin K., Haraoui L. P., Johnson E., Keck F., Lorimer J., McFall-Ngai M. J., Nichter M., Pettersson S., Poinar H., Rees T., Tropini C., Undurraga E. A., Zhao L. & Melby M. K. (2024), Proceedings of the National Academy of Sciences. 121, 20, e231397112

  • Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner

    Authors: Jaber Y., Sarusi-Portuguez A., Netanely Y., Naamneh R., Yacoub S., Saar O., Drawshave N., Eli-Berchoer L., Shapiro H., Elinav E., Wilensky A. & Hovav A. H. (2024), npj Biofilms and Microbiomes. 10, 142

  • Microbiome modulation of antigen presentation in tolerance and inflammation

    Authors: He Y., Mohapatra G., Asokan S., Nobs S. P. & Elinav E. (2024), Current Opinion in Immunology. 91, 102471

  • Complement(ing) the microbiome in infants through breastmilk

    Authors: Nobs S. P. & Elinav E. (2024), Cell Research. 34, 7, p. 469-470

  • Bacterial Skin Dysbiosis in Darier Disease

    Authors: Reiter O., Leshem A., Alexander-Shani R., Brandwein M., Cohen Y., Yeshurun A., Ziv M., Elinav E., Hodak E. & Dodiuk-Gad R. P. (2024), Dermatology. 240, 3, p. 443-452

  • Integrated Metabolomics and Proteomics of Symptomatic and Early Presymptomatic States of Colitis

    Authors: Shimshoni E., Solomonov I., Sagi I. & Ghini V. (2024), Journal of Proteome Research. 23, 4, p. 1420-1432

  • Cryptic diversity of cellulose-degrading gut bacteria in industrialized humans

    Authors: Moraïs S., Winkler S., Zorea A., Levin L., Nagies F. S., Kapust N., Lamed E., Artan-Furman A., Bolam D. N., Yadav M. P., Bayer E. A., Martin W. F. & Mizrahi I. (2024), Science. 383, 6688, eadj9223

  • Identification of gut microbiome features associated with host metabolic health in a large population-based cohort

    Authors: Keshet A. & Segal E. (2024), Nature Communications. 15, 9358

  • d-Glutamate production by stressed Escherichia coli gives a clue for the hypothetical induction mechanism of the ALS disease

    Authors: Monselise E. B. I., Vyazmensky M., Scherf T., Batushansky A. & Fishov I. (2024), Scientific Reports. 14, 18247

  • A microbial iron fist to fight tumors

    Authors: Nobs S. P. & Elinav E. (2024), Nature Immunology. 25, 5, p. 720-721

  • Diagnosis and Risk Factors of Prediabetes and Diabetes in People Living With Human Immunodeficiency Virus: Evaluation of Clinical and Microbiome Parameters: Evaluation of Clinical and Microbiome Parameters

    Authors: Bar Ziv O., Cahn A., Jansen T., Istomin V., Kedem E., Olshtain-Pops K., Israel S., Oster Y., Orenbuch-Harroch E., Korem M., Strahilevitz J., Levy I., Valdés-Mas R., Ivanova V., Elinav E., Shahar E. & Elinav H. (2024), Journal of Infectious Diseases. 230, 2, p. 411-420

  • Pangenomes of human gut microbiota uncover links between genetic diversity and stress response

    Authors: Shoer S., Reicher L., Zhao C., Pollard K. S., Pilpel Y. & Segal E. (2024), Cell Host and Microbe. 32, 10, p. 1744-1757.e2

  • Mechanisms by which microbiome-derived metabolites exert their impacts on neurodegeneration

    Authors: Kern L., Mastandrea I., Melekhova A. & Elinav E. (2024), Cell Chemical Biology. 32, 1, p. 25-45

  • Melanoma and microbiota: Current understanding and future directions

    Authors: Routy B., Jackson T., Mählmann L., Baumgartner C. K., Blaser M., Byrd A., Corvaia N., Couts K., Davar D., Derosa L., Hang H. C., Hospers G., Isaksen M., Kroemer G., Malard F., McCoy K. D., Meisel M., Pal S., Ronai Z., Segal E., Sepich-Poore G. D., Shaikh F., Sweis R. F., Trinchieri G., van den Brink M., Weersma R. K., Whiteson K., Zhao L., McQuade J., Zarour H. & Zitvogel L. (2024), Cancer Cell. 42, 1, p. 16-34

  • Fine-tuning the gut ecosystem: the current landscape and outlook of artificial microbiome therapeutics

    Authors: Porcari S., Fusco W., Spivak I., Fiorani M., Gasbarrini A., Elinav E., Cammarota G. & Ianiro G. (2024), The Lancet Gastroenterology and Hepatology. 9, 5, p. 460-475

  • Modeling cancermicrobiome interactions in vitro: A guide to co-culture platforms

    Authors: Moskal K., Khurana N., Siegert L., Lee Y. S., Clevers H., Elinav E. & Puschhof J. (2024), International Journal of Cancer. 156, 11, p. 2053-2067

  • Antibiotic-induced loss of gut microbiome metabolic output correlates with clinical responses to CAR T-cell therapy

    Authors: Prasad R., Rehman A., Rehman L., Darbaniyan F., Blumenberg V., Schubert M. L., Mor U., Zamir E., Schmidt S., Hayase T., Chang C. C., McDaniel L., Flores I., Strati P., Nair R., Chihara D., Fayad L. E., Ahmed S., Iyer S. P., Wang M., Jain P., Nastoupil L. J., Westin J., Arora R., Turner J., Khawaja F., Wu R., Dennison J. B., Menges M., Hidalgo-Vargas M., Reid K., Davila M. L., Dreger P., Korell F., Schmitt A., Tanner M. R., Champlin R. E., Flowers C. R., Shpall E. J., Hanash S., Neelapu S. S., Schmitt M., Subklewe M., Francois-Fahrmann J., Stein-Thoeringer C. K., Elinav E., Jain M. D., Hayase E., Jenq R. R. & Saini N. Y. (2024), Blood. 145, 8, p. 823-839

  • Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohort

    Authors: Braun T., Feng R., Amir A., Levhar N., Shacham H., Mao R., Toren I., Abu-Saad K., Zhuo S., Efroni G., Malik A., Picard O., Yavzori M., Agranovich B., Liu T. C., Stappenbeck T. S., Denson L., Kalter-Leibovici O., Gottlieb E., Borenstein E., Elinav E., Chen M., Ben-Horin S. & Haberman Y. (2024), Nature Communications. 15, 1, 3764

  • Bacterial SNPs in the human gut microbiome associate with host BMI

    Authors: Zahavi L., Lavon A., Reicher L., Shoer S., Godneva A., Leviatan S., Rein M., Weissbrod O., Weinberger A. & Segal E. (2023), Nature Medicine. 29, 11, p. 2785-2792

  • Microbiome-phage interactions in inflammatory bowel disease

    Authors: Federici S., Kviatcovsky D., Valdés-Mas R. & Elinav E. (2023), Clinical Microbiology and Infection. 29, 6, p. 682-688

  • TET2 and TET3 loss disrupts small intestine differentiation and homeostasis

    Authors: Ansari I., Solé-Boldo L., Ridnik M., Gutekunst J., Gilliam O., Korshko M., Liwinski T., Jickeli B., Weinberg-Corem N., Shoshkes-Carmel M., Pikarsky E., Elinav E., Lyko F. & Bergman Y. (2023), Nature Communications. 14, 1, 4005

  • A non-antibiotic-disrupted gut microbiome is associated with clinical responses to CD19-CAR-T cell cancer immunotherapy

    Authors: Stein-Thoeringer C. K., Saini N. Y., Zamir E., Blumenberg V., Schubert M. L., Mor U., Fante M. A., Schmidt S., Hayase E., Hayase T., Rohrbach R., Chang C. C., McDaniel L., Flores I., Gaiser R., Edinger M., Wolff D., Heidenreich M., Strati P., Nair R., Chihara D., Fayad L. E., Ahmed S., Iyer S. P., Steiner R. E., Jain P., Nastoupil L. J., Westin J., Arora R., Wang M. L., Turner J., Menges M., Hidalgo-Vargas M., Reid K., Dreger P., Schmitt A., Müller-Tidow C., Locke F. L., Davila M. L., Champlin R. E., Flowers C. R., Shpall E. J., Poeck H., Neelapu S. S., Schmitt M., Subklewe M., Jain M. D., Jenq R. R. & Elinav E. (2023), Nature Medicine. 29, 4, p. 906-916

  • Dietary fibers & immunitymore than meets the eye

    Authors: Cohen Y. & Elinav E. (2023),

  • Microbiota-dependent and -independent postnatal development of salivary immunity

    Authors: Zubeidat K., Jaber Y., Saba Y., Barel O., Naamneh R., Netanely Y., Horev Y., Eli-berchoer L., Shhadeh A., Yosef O., Arbib E., Betser-Cohen G., Nadler C., Shapiro H., Elinav E., Aframian D. J., Wilensky A. & Hovav A. (2023), Cell reports (Cambridge). 42, 1, 111981

  • Impact of caloric restriction on the gut microbiota

    Authors: Kern L., Kviatcovsky D., He Y. & Elinav E. (2023), Current Opinion in Microbiology. 73, 102287

  • Aerial transport of bacteria by dust plumes in the Eastern Mediterranean revealed by complementary rRNA/rRNA-gene sequencing

    Authors: Erkorkmaz B. A., Gat D. & Rudich Y. (2023), Communications Earth and Environment. 4, 1, 24

  • Utilization of the microbiome in personalized medicine

    Authors: Ratiner K., Ciocan D., Abdeen S. K. & Elinav E. (2023), Nature Reviews Microbiology. 22, 5, p. 291-308

  • Intestinal B cells license metabolic T-cell activation in NASH microbiota/antigen-independently and contribute to fibrosis by IgA-FcR signalling

    Authors: Kotsiliti E., Leone V., Schuehle S., Govaere O., Li H., Wolf M. J., Horvatic H., Bierwirth S., Hundertmark J., Inverso D., Zizmare L., Sarusi-Portuguez A., Gupta R., O'Connor T., Giannou A. D., Shiri A. M., Schlesinger Y., Beccaria M. G., Rennert C., Pfister D., Öllinger R., Gadjalova I., Ramadori P., Rahbari M., Rahbari N., Healy M. E., Fernández-Vaquero M., Yahoo N., Janzen J., Singh I., Fan C., Liu X., Rau M., Feuchtenberger M., Schwaneck E., Wallace S. J., Cockell S., Wilson-Kanamori J., Ramachandran P., Kho C., Kendall T. J., Leblond A. L., Keppler S. J., Bielecki P., Steiger K., Hofmann M., Rippe K., Zitzelsberger H., Weber A., Malek N., Luedde T., Vucur M., Augustin H. G., Flavell R., Parnas O., Rad R., Pabst O., Henderson N. C., Huber S., Macpherson A., Knolle P., Claassen M., Geier A., Trautwein C., Unger K., Elinav E., Waisman A., Abdullah Z., Haller D., Tacke F., Anstee Q. M. & Heikenwalder M. (2023), Journal of Hepatology. 79, 2, p. 296-313

  • Engineering bacteria to modulate host metabolism

    Authors: Ciocan D. & Elinav E. (2023), Acta Physiologica. 238, 3, e14001

  • Ex vivo intestinal permeability assay (X-IPA) for tracking barrier function dynamics

    Authors: Bootz-Maoz H., Simon A., Del Mare-Roumani S., Bennet Y., Toister E., Romano H., Zheng D., Amidror S., Elinav E. & Yissachar N. (2023), npj Biofilms and Microbiomes. 9, 1, 44

  • Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

    Authors: Kennedy K. M., de Goffau M. C., Perez-Muñoz M. E., Arrieta M., Bäckhed F., Bork P., Braun T., Bushman F. D., Dore J., de Vos W. M., Earl A. M., Eisen J. A., Elovitz M. A., Ganal-Vonarburg S. C., Gänzle M. G., Garrett W. S., Hall L. J., Hornef M. W., Huttenhower C., Konnikova L., Lebeer S., Macpherson A. J., Massey R. C., McHardy A. C., Koren O., Lawley T. D., Ley R. E., O'Mahony L., O'Toole P. W., Pamer E. G., Parkhill J., Raes J., Rattei T., Salonen A., Segal E., Segata N., Shanahan F., Sloboda D. M., Smith G. C. S., Sokol H., Spector T. D., Surette M. G., Tannock G. W., Walker A. W., Yassour M. & Walter J. (2023), Nature. 613, 7945, p. 639-649

  • Impact of dietary interventions on pre-diabetic oral and gut microbiome, metabolites and cytokines

    Authors: Shoer S., Shilo S., Godneva A., Ben-Yacov O., Rein M., Wolf B. C., Lotan-Pompan M., Bar N., Weiss E. I., Houri-Haddad Y., Pilpel Y., Weinberger A. & Segal E. (2023), Nature Communications. 14, 1, 5384

  • Daily turnover of active giant virus infection during algal blooms revealed by single-cell transcriptomics

    Authors: Hevroni G., Vincent F., Ku C., Sheyn U. & Vardi A. (2023), Science advances. 9, 41, eadf7971

  • Gut microbiome modulates the effects of a personalised postprandial-targeting (PPT) diet on cardiometabolic markers: a diet intervention in pre-diabetes

    Authors: Ben-Yacov O., Godneva A., Rein M., Shilo S., Lotan-Pompan M., Weinberger A. & Segal E. (2023), Gut. 72, 8, p. 1486-1496

  • CAR-T Cell Therapy and the Gut Microbiota

    Authors: Asokan S., Cullin N., Stein-Thoeringer C. K. & Elinav E. (2023), Cancers. 15, 3, 794

  • Tissue-specific macrophage immunometabolism

    Authors: Ben-Arosh H. & Avraham R. (2023), Current Opinion in Immunology. 84, 102369

  • Immunometabolism at the crossroads of obesity and cancera Keystone Symposia report

    Authors: Cable J., Rathmell J. C., Pearce E. L., Ho P. C., Haigis M. C., Mamedov M. R., Wu M. J., Kaech S. M., Lynch L., Febbraio M. A., Bapat S. P., Hong H. S., Zou W., Belkaid Y., Sullivan Z. A., Keller A., Wculek S. K., Green D. R., Postic C., Amit I., Benitah S. A., Jones R. G., Reina-Campos M., Torres S. V., Beyaz S., Brennan D., O'Neill L. A., Perry R. J. & Brenner D. (2023), Annals of the New York Academy of Sciences. 1523, 1, p. 38-50

  • Intracellular bacteria in cancerprospects and debates

    Authors: Schorr L., Mathies M., Elinav E. & Puschhof J. (2023), npj Biofilms and Microbiomes. 9, 1, 76

  • Circadian regulation of liver function: from molecular mechanisms to disease pathophysiology

    Authors: Bolshette N., Ibrahim H., Reinke H. & Asher G. (2023), Nature Reviews Gastroenterology and Hepatology. 20, 11, p. 695-707

  • Viral infection switches the balance between bacterial and eukaryotic recyclers of organic matter during coccolithophore blooms

    Authors: Vincent F., Gralka M., Schleyer G., Schatz D., Cabrera-Brufau M., Kuhlisch C., Sichert A., Vidal-Melgosa S., Mayers K., Barak-Gavish N., Flores J. M., Masdeu-Navarro M., Egge J. K., Larsen A., Hehemann J., Marrasé C., Simó R., Cordero O. X. & Vardi A. (2023), Nature Communications. 14, 1, 510

  • Fungi and cancer

    Authors: Saftien A., Puschhof J. & Elinav E. (2023), Gut. 72, 7, p. 1410-1425

  • Langerhans cells shape postnatal oral homeostasis in a mechanical-force-dependent but microbiota and IL17-independent manner

    Authors: Jaber Y., Netanely Y., Naamneh R., Saar O., Zubeidat K., Saba Y., Georgiev O., Kles P., Barel O., Horev Y., Yosef O., Eli-Berchoer L., Nadler C., Betser-Cohen G., Shapiro H., Elinav E., Wilensky A. & Hovav A. H. (2023), Nature Communications. 14, 5628

  • Mucosal transcriptomics highlight lncRNAs implicated in ulcerative colitis, Crohn's disease, and celiac disease

    Authors: Braun T., Sosnovski K. E., Amir A., BenShoshan M., VanDussen K. L., Karns R., Levhar N., Abbas-Egbariya H., Hadar R., Efroni G., Castel D., Avivi C., Rosen M. J., Grifiths A. M., Walters T. D., Mack D. R., Boyle B. M., Ali S. A., Moore S. R., Schirmer M., Xavier R. J., Kugathasan S., Jegga A. G., Weiss B., Mayer C., Barshack I., Ben-Horin S., Ulitsky I., Beucher A., Ferrer J., Hyams J. S., Denson L. A. & Haberman Y. (2023), JCI Insight. 8, 14, e170181

  • Epithelial Nlrp10 inflammasome mediates protection against intestinal autoinflammation

    Authors: Zheng D., Mohapatra G., Kern L., He Y., Shmueli M. D., Valdés-Mas R., Kolodziejczyk A. A., Próchnicki T., Vasconcelos M. B., Schorr L., Hertel F., Lee Y. S., Rufino M. C., Ceddaha E., Shimshy S., Hodgetts R. J., Dori-Bachash M., Kleimeyer C., Goldenberg K., Heinemann M., Stettner N., Harmelin A., Shapiro H., Puschhof J., Chen M., Flavell R. A., Latz E., Merbl Y., Abdeen S. K. & Elinav E. (2023), Nature Immunology. 24, 4, p. 585-594

  • Phage-display immunoprecipitation sequencing of the antibody epitope repertoire in inflammatory bowel disease reveals distinct antibody signatures

    Authors: Bourgonje A. R., Andreu-Sánchez S., Vogl T., Hu S., Vich Vila A., Gacesa R., Leviatan S., Kurilshikov A., Klompus S., Kalka I. N., van Dullemen H. M., Weinberger A., Visschedijk M. C., Festen E. A., Faber K. N., Wijmenga C., Dijkstra G., Segal E., Fu J., Zhernakova A. & Weersma R. K. (2023), Immunity. 56, 6, p. 1393-1409.e6

  • Blood coagulation and beyond: Position paper from the Fourth Maastricht Consensus Conference on Thrombosis

    Authors: Akbulut A. C., Arisz R. A., Baaten C. C., Baidildinova G., Barakzie A., Bauersachs R., Berg J. t., van den Broek W. W., Boer H. C., Bonifay A., Bröker V., Buka R. J., Cate H. t., Cate-Hoek A. J., Cointe S., Luca C. D., Simone I. D., Diaz R. V., Dignat-George F., Freson K., Gazzaniga G., van Gorp E. C., Habibi A., Henskens Y. M., Iding A. F., Khan A., Koenderink G. H., Konkoth A., Lacroix R., Lahiri T., Lam W., Lamerton R. E., Lorusso R., Luo Q., Maas C., Mccarty O. J., van der Meijden P. E., Meijers J. C., Mohapatra A. K., Nevo N., Robles A. P., Poncelet P., Reinhardt C., Ruf W., Saraswat R., Schönichen C., Schutgens R., Simioni P., Spada S., Spronk H. M., Tazhibayeva K., Thachil J., Vallier L., Veninga A., Verhamme P., Visser C., Watson S. P., Wenzel P., Willems R. A., Willers A., Zhang P., Zifkos K. & Zonneveld A. J. v. (2023), Thrombosis and Haemostasis. 123, 8, p. 808-839

  • Small Intestinal Microbiota Oscillations, Host Effects and RegulationA Zoom into Three Key Effector Molecules

    Authors: Ratiner K., Fachler-Sharp T. & Elinav E. (2023), Biology (Basel, Switzerland). 12, 1, 142

  • Lactation-associated macrophages exist in murine mammary tissue and human milk

    Authors: Cansever D., Petrova E., Krishnarajah S., Mussak C., Welsh C. A., Mildenberger W., Mulder K., Kreiner V., Roussel E., Stifter S. A., Andreadou M., Zwicky P., Jurado N. P., Rehrauer H., Tan G., Liu Z., Blériot C., Ronchi F., Macpherson A. J., Ginhoux F., Natalucci G., Becher B. & Greter M. (2023), Nature Immunology. 24, 7, p. 1098-1109

  • Human microbiome research: Growing pains and future promises

    Authors: Puschhof J. & Elinav E. (2023), PLoS Biology. 21, 3, e3002053

  • TRAF3 suppression encourages B cell recruitment and prolongs survival of microbiome-intact mice with ovarian cancer

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  • Systemic Regulation of Host Energy and Oogenesis by Microbiome-Derived Mitochondrial Coenzymes

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  • Our Microbiome: On the Challenges, Promises, and Hype

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  • Personalized Nutrition: Are We There Yet?

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  • The Immune System Computes the State of the Body: Crowd Wisdom, Machine Learning, and Immune Cell Reference Repertoires Help Manage Inflammation

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  • The Plant Host Induces Antibiotic Production To Select the Most-Beneficial Colonizers

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  • When Cultures Meet: The Landscape of "Social" Interactions between the Host and Its Indigenous Microbes

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  • Fecal Microbial Transplantation and Its Potential Application in Cardiometabolic Syndrome

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  • Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes

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  • Transforming medicine with the microbiome

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  • Phytobiome metabolism: Beneficial soil microbes steer crop plants' secondary metabolism

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  • Helminth-Based Product and the Microbiome of Mice with Lupus

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  • Loss of MicroRNA-21 Influences the Gut Microbiota, Causing Reduced Susceptibility in a Murine Model of Colitis

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  • Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner

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  • Hyperglycemia drives intestinal barrier dysfunction and risk for enteric infection

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  • Assembly of Synthetic Functional Cellulosomal Structures onto the Cell Surface of Lactobacillus plantarum, a Potent Member of the Gut Microbiome

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  • Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis

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  • High Levels of CO2 Induce Spoilage by Leuconostoc mesenteroides by Upregulating Dextran Synthesis Genes

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  • The anti-inflammatory IFITM genes ameliorate colitis and partially protect from tumorigenesis by changing immunity and microbiota

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  • Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

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  • Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine

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  • The path towards microbiome-based metabolite treatment

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  • Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation

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  • Inflammasomes and intestinal inflammation

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  • Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

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  • How holobionts get sick-toward a unifying scheme of disease

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  • NLRP6: A Multifaceted Innate Immune Sensor

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  • Irf4-dependent CD103(+) CD11b(+) dendritic cells and the intestinal microbiome regulate monocyte and macrophage activation and intestinal peristalsis in postoperative ileus

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  • Tuftsin-phosphorylcholine maintains normal gut microbiota in collagen induced arthritic mice

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  • The microbiome in anti-cancer therapy

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  • Personalized microbiome-based approaches to metabolic syndrome management and prevention

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  • GAS6 is a key homeostatic immunological regulator of host-commensal interactions in the oral mucosa

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  • Involvement of a gut-retina axis in protection against dietary glycemia-induced age-related macular degeneration

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  • Origin-Dependent Variations in the Atmospheric Microbiome Community in Eastern Mediterranean Dust Storms

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  • Quinones are growth factors for the human gut microbiota

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  • Post-dieting weight gain: The role of persistent microbiome changes

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  • Dysbiosis and the immune system

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  • The gut microbiome and hypertension

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  • Perspective: Improving nutritional guidelines for sustainable health policies: Current status and perspectives

    Authors: Magni P., Bier D. M., Pecorelli S., Agostoni C., Astrup A., Brighenti F., Cook R., Folco E., Fontana L., Gibson R. A., Guerra R., Guyatt G. H., Ioannidis J. P., Jackson A. S., Klurfeld D. M., Makrides M., Mathioudakis B., Monaco A., Patel C. J., Racagni G., Schünemann H. J., Shamir R., Zmora N. & Peracino A. (2017), Advances in Nutrition. 8, 4, p. 532-545

  • Impact of cystic fibrosis disease on archaea and bacteria composition of gut microbiota

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  • The remedy within: will the microbiome fulfill its therapeutic promise?

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  • The Role of the Immune System in Metabolic Health and Disease

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  • Microbiome at the Frontier of Personalized Medicine

    Authors: Kashyap P. C., Chia N., Nelson H., Segal E. & Elinav E. (2017), Mayo Clinic Proceedings. 92, 12, p. 1855-1864

  • Computational prediction of regulatory, premature transcription termination in bacteria

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  • Our Gut Microbiome: The Evolving Inner Self

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  • Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses

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  • Microbiome-modulated metabolites at the interface of host immunity

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  • Microglia development follows a stepwise program to regulate brain homeostasis

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  • Biological causal links on physiological and evolutionary time scales

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  • Circulating Monocytes in between the Gut and the Mind

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  • Metabolites: Messengers between the microbiota and the immune system

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  • Bioaerosols in the Earth system: Climate, health, and ecosystem interactions

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  • Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations

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  • Use of metatranscriptomics in microbiome research

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  • Non-alcoholic fatty liver and the gut microbiota

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  • Persistent microbiome alterations modulate the rate of post-dieting weight regain

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  • It's in the milk: Feeding the microbiome to promote infant growth

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  • In Vivo Analysis of Intestinal Mononuclear Phagocytes

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  • The microbiome and innate immunity

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  • The Microbiota and Its Modulation in Immune-Mediated Disorders

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  • The gut microbiome in human immunodeficiency virus infection

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  • Type i interferons and microbial metabolites of tryptophan modulate astrocyte activity and central nervous system inflammation via the aryl hydrocarbon receptor

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  • The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome

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  • Role of the microbiome in the normal and aberrant glycemic response

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  • Updating Darwin: Information and entropy drive the evolution of life

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  • Role of the microbiome in non-gastrointestinal cancers

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  • Ribosomal antibiotics: Contemporary challenges

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  • Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling

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  • A day in the life of the meta-organism: Diurnal rhythms of the intestinal microbiome and its host

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  • Epithelial IL-18 Equilibrium Controls Barrier Function in Colitis

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  • Personalized Nutrition by Prediction of Glycemic Responses

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  • Unique organization of extracellular amylases into amylosomes in the resistant starch-utilizing human colonic firmicutes bacterium ruminococcus bromii

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  • Inflammasomes and the microbiotapartners in the preservation of mucosal homeostasis

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  • Time for food: The intimate interplay between nutrition, metabolism, and the circadian clock

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